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Metabolic channeling: predictions, deductions, and evidence

Journal

MOLECULAR CELL
Volume 81, Issue 18, Pages 3775-3785

Publisher

CELL PRESS
DOI: 10.1016/j.molcel.2021.08.030

Keywords

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Funding

  1. NIH [R01GM140032, GM024129-40]
  2. Huck Institutes of Life Sciences, Penn State
  3. National Science Foundation, through the Center for the Physics of Biological Function [PHY-1734030]

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Metabolic channeling postulates that enzymes can directly transfer products to each other, increasing flux and isolating intermediates. This concept is supported by physical molecular tunnels, multi-enzyme complexes, and enzyme clusters.
With the elucidation of myriad anabolic and catabolic enzyme-catalyzed cellular pathways crisscrossing each other, an obvious question arose: how could these networks operate with maximal catalytic efficiency and minimal interference? A logical answer was the postulate of metabolic channeling, which in its simplest embodiment assumes that the product generated by one enzyme passes directly to a second without diffusion into the surrounding medium. This tight coupling of activities might increase a pathway's metabolic flux and/or serve to sequester unstable/toxic/reactive intermediates as well as prevent their access to other networks. Here, we present evidence for this concept, commencing with enzymes that feature a physical molecular tunnel, to multi-enzyme complexes that retain pathway substrates through electrostatics or enclosures, and finally to metabolons that feature collections of enzymes assembled into clusters with variable stoichiometric composition. Lastly, we discuss the advantages of reversibly assembled metabolons in the context of the purinosome, the purine biosynthesis metabolon.

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