Related references
Note: Only part of the references are listed.Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam
Jack Chi-Ho Ip et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Conservative route to genome compaction in a miniature annelid
Jose M. Martin-Duran et al.
NATURE ECOLOGY & EVOLUTION (2021)
Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts
Yi Yang et al.
ISME JOURNAL (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
The Scaly-foot Snail genome and implications for the origins of biomineralised armour
Jin Sun et al.
NATURE COMMUNICATIONS (2020)
Ecological characterization of cold-seep epifauna in the South China Sea
Yu Zhao et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2020)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta
Florian U. Moeller et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Comparative transcriptomic analysis illuminates the host-symbiont interactions in the deep-sea mussel Bathymodiolus platifrons
Hao Wang et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2019)
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi
Yuanning Li et al.
BMC BIOLOGY (2019)
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis
Tjorven Hinzke et al.
MBIO (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Host-Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights From Transcriptome Sequencing
Yi Lan et al.
FRONTIERS IN MARINE SCIENCE (2019)
Functional horizontal gene transfer from bacteria to eukaryotes
Filip Husnik et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Endosymbiont genomes yield clues of tubeworm success
Yuanning Li et al.
ISME JOURNAL (2018)
Novel Genes, Ancient Genes, and Gene Co-Option Contributed o the Genetic Basis of the Radula, a Molluscan Innovation
Leon Hilgers et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Involvement of a host Cathepsin L in symbiont-induced cell death
Suzanne M. Peyer et al.
MICROBIOLOGYOPEN (2018)
Transcriptional changes in the Japanese scallop (Mizuhopecten yessoensis) shellinfested by Polydora provide insights into the molecular mechanism of shell formation and immunomodulation
Junxia Mao et al.
SCIENTIFIC REPORTS (2018)
Immunological properties of oxygen-transport proteins: hemoglobin, hemocyanin and hemerythrin
Christopher J. Coates et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2017)
Insights from the Shell Proteome: Biomineralization to Adaptation
Jaison Arivalagan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods
Yuanning Li et al.
ZOOLOGICA SCRIPTA (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Massive horizontal transfer of transposable elements in insects
Jean Peccoud et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko et al.
SCIENCE (2017)
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes
Jin Sun et al.
NATURE ECOLOGY & EVOLUTION (2017)
Scallop genome provides insights into evolution of bilaterian karyotype and development
Shi Wang et al.
NATURE ECOLOGY & EVOLUTION (2017)
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
Juliane Wippler et al.
BMC GENOMICS (2016)
Redundans: an assembly pipeline for highly heterozygous genomes
Leszek P. Pryszcz et al.
NUCLEIC ACIDS RESEARCH (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
Detection of Prokaryotic Genes in the Amphimedon queenslandica Genome
Cecilia Conaco et al.
PLOS ONE (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales
Mario dos Reis et al.
CURRENT BIOLOGY (2015)
Infiltration of chitin by protein coacervates defines the squid beak mechanical gradient
YerPeng Tan et al.
NATURE CHEMICAL BIOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization
Yi-Jyun Luo et al.
NATURE COMMUNICATIONS (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant et al.
GENOME BIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
On the instability and evolutionary age of deep-sea chemosynthetic communities
Robert C. Vrijenhoek
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2013)
Lysosomal cell death at a glance
Sonja Aits et al.
JOURNAL OF CELL SCIENCE (2013)
The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling
Paula Ramos-Silva et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Insights into bilaterian evolution from three spiralian genomes
Oleg Simakov et al.
NATURE (2013)
Innate immune recognition of the microbiota promotes host-microbial symbiosis
Hiutung Chu et al.
NATURE IMMUNOLOGY (2013)
Hox gene expression during postlarval development of the polychaete Alitta virens
Nadezhda I. Bakalenko et al.
EVODEVO (2013)
Expression of Hox genes during regeneration of nereid polychaete Alitta (Nereis) virens (Annelida, Lophotrochozoa)
Elena L. Novikova et al.
EVODEVO (2013)
Myosin-5, kinesin-1 and myosin-17 cooperate in secretion of fungal chitin synthase
Martin Schuster et al.
EMBO JOURNAL (2012)
The oyster genome reveals stress adaptation and complexity of shell formation
Guofan Zhang et al.
NATURE (2012)
Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses
Spencer V. Nyholm et al.
NATURE REVIEWS MICROBIOLOGY (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
Karlheinz Mann et al.
PROTEOME SCIENCE (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
New Perspectives on the Ecology and Evolution of Siboglinid Tubeworms
Ana Hilario et al.
PLOS ONE (2011)
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek et al.
PLOS ONE (2011)
Genes encoding proteins with peritrophin A-type chitin-binding domains in Tribolium castaneum are grouped into three distinct families based on phylogeny, expression and function
Sinu Jasrapuria et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2010)
The role of the immune system in the initiation and persistence of the Euprymna scolopes-Vibrio fischeri symbiosis
Margaret McFall-Ngai et al.
SEMINARS IN IMMUNOLOGY (2010)
Common trends in mutualism revealed by model associations between invertebrates and bacteria
John Chaston et al.
FEMS MICROBIOLOGY REVIEWS (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Myosin Motor-Like Domain of the Class VI Chitin Synthase CsmB Is Essential to Its Functions in Aspergillus nidulans
Makusu Tsuizaki et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2009)
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
Thomas J. Sharpton et al.
GENOME RESEARCH (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Cathepsins: Key modulators of cell death and inflammatory responses
Sebastien Conus et al.
BIOCHEMICAL PHARMACOLOGY (2008)
The amphioxus genome and the evolution of the chordate karyotype
Nicholas H. Putnam et al.
NATURE (2008)
Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
Nicole Dubilier et al.
NATURE REVIEWS MICROBIOLOGY (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)
The structure of mollusc larval shells formed in the presence of the chitin synthase inhibitor Nikkomycin Z
Veronika Schonitzer et al.
BMC STRUCTURAL BIOLOGY (2007)
Accelerated rate of gene gain and loss in primates
Matthew W. Hahn et al.
GENETICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Transposable elements and the epigenetic regulation of the genome
R. Keith Slotkin et al.
NATURE REVIEWS GENETICS (2007)
The hydrocarbon seep tubeworm Lamellibrachia luymesi primarily eliminates sulfate and hydrogen ions across its roots to conserve energy and ensure sulfide supply
Sharmishtha Dattagupta et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Horizontal endosymbiont transmission in hydrothermal vent tubeworms
AD Nussbaumer et al.
NATURE (2006)
An overview of the serpin superfamily
Ruby H. P. Law et al.
GENOME BIOLOGY (2006)
Modulating Hox gene functions during animal body patterning
JC Pearson et al.
NATURE REVIEWS GENETICS (2005)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2005)
Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin
JF Flores et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Chemoattraction of Vibrio fischeri to serine, nucleosides, and N-acetylneuraminic acid, a component of squid light-organ mucus
CR DeLoney-Marino et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Mannose 6-phosphate receptors: New twists in the tale
P Ghosh et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2003)
Are hydrothermal vent animals living fossils?
CTS Little et al.
TRENDS IN ECOLOGY & EVOLUTION (2003)
Distribution and evolution of von Willebrand/integrin a domains: Widely dispersed adhesion and elsewhere
CA Whittaker et al.
MOLECULAR BIOLOGY OF THE CELL (2002)
Evolution of the sulfide-binding function within the globin multigenic family of the deep-sea hydrothermal vent tubeworm Riftia pachyptila
X Bailly et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Vestimentiferans (Pogonophora) in the Pacific and Indian Oceans:: a new genus from Lihir Island (Papua New Guinea) and the Java Trench, with the first report of Arcovestia ivanovi from the North Fiji Basin
EC Southward et al.
JOURNAL OF NATURAL HISTORY (2002)
A novel chitin-binding protein from the vestimentiferan Riftia pachyptila interacts specifically with β-chitin -: Cloning, expression, and characterization
L Chamoy et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
An autoradiographic examination of carbon fixation, transfer and utilization in the Riftia pachyptila symbiosis
M Bright et al.
MARINE BIOLOGY (2000)
Share Paper
