4.6 Article

Integrative Analysis of Colonic Biopsies from Inflammatory Bowel Disease Patients Identifies an Interaction Between Microbial Bile Acid-inducible Gene Abundance and Human Angiopoietin-like 4 Gene Expression

Related references

Note: Only part of the references are listed.
Article Gastroenterology & Hepatology

Persistent Diarrhea in Patients With Crohn's Disease After Mucosal Healing Is Associated With Lower Diversity of the Intestinal Microbiome and Increased Dysbiosis

Karen Boland et al.

Summary: Symptoms in patients with inflammatory bowel diseases (IBDs) may be related to the composition of the intestinal microbiome even after successful treatment, particularly in patients with persistent diarrhea where microbial diversity is lower.

CLINICAL GASTROENTEROLOGY AND HEPATOLOGY (2021)

Article Multidisciplinary Sciences

Inflammation status modulates the effect of host genetic variation on intestinal gene expression in inflammatory bowel disease

Shixian Hu et al.

Summary: The study investigated intestinal biopsies from 171 IBD patients and identified inflammation-dependent intestinal cis-eQTLs that mainly interact with prevalence of immune cell types. This genetic susceptibility under inflammatory conditions may guide future drug development and precision medicine in IBD patients.

NATURE COMMUNICATIONS (2021)

Review Gastroenterology & Hepatology

Diversification of host bile acids by members of the gut microbiota

Jenessa A. Winston et al.

GUT MICROBES (2020)

Article Microbiology

Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation

Sidhartha R. Sinha et al.

CELL HOST & MICROBE (2020)

Article Genetics & Heredity

Interactions between the gut microbiome and host gene regulation in cystic fibrosis

Gargi Dayama et al.

GENOME MEDICINE (2020)

Article Multidisciplinary Sciences

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Jason Lloyd-Price et al.

NATURE (2019)

Article Biotechnology & Applied Microbiology

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

Promi Das et al.

BMC GENOMICS (2019)

Article Multidisciplinary Sciences

Bile acid metabolites control TH17 and Treg cell differentiation

Saiyu Hang et al.

NATURE (2019)

Article Multidisciplinary Sciences

Species Level Description of the Human Ileal Bacterial Microbiota

Heidi Cecilie Villmones et al.

SCIENTIFIC REPORTS (2018)

Review Biochemistry & Molecular Biology

Interactions between gut bacteria and bile in health and disease

Sarah L. Long et al.

MOLECULAR ASPECTS OF MEDICINE (2017)

Correction Biotechnology & Applied Microbiology

Shotgun metagenomics, from sampling to analysis (vol 35, pg 833, 2017)

Christopher Quince et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

ANGPTL4 promotes bile acid absorption during taurocholic acid supplementation via a mechanism dependent on the gut microbiota

Aafke W. F. Janssen et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS (2017)

Review Immunology

Gut microbiota, metabolites and host immunity

Michelle G. Rooks et al.

NATURE REVIEWS IMMUNOLOGY (2016)

Article Cell Biology

ANGPTL4 is produced by entero-endocrine cells in the human intestinal tract

Sheril Alex et al.

HISTOCHEMISTRY AND CELL BIOLOGY (2014)

Article Medicine, Research & Experimental

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

Yael Haberman et al.

JOURNAL OF CLINICAL INVESTIGATION (2014)

Article Multidisciplinary Sciences

Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut

Susan A. Joyce et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Endocrinology & Metabolism

Regulation of lipoprotein lipase by AngptI4

Wieneke Dijk et al.

TRENDS IN ENDOCRINOLOGY AND METABOLISM (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Microbiology

Genetic Diversity of Bile Salt Hydrolases Among Human Intestinal Bifidobacteria

Piotr Jarocki et al.

CURRENT MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille et al.

NATURE BIOTECHNOLOGY (2013)

Article Gastroenterology & Hepatology

Nod1 and Nod2 signaling does not alter the composition of intestinal bacterial communities at homeostasis

Susan J. Robertson et al.

GUT MICROBES (2013)

Article Gastroenterology & Hepatology

Twin Study Indicates Loss of Interaction Between Microbiota and Mucosa of Patients With Ulcerative Colitis

Patricia Lepage et al.

GASTROENTEROLOGY (2011)

Article Biotechnology & Applied Microbiology

Metagenomic biomarker discovery and explanation

Nicola Segata et al.

GENOME BIOLOGY (2011)

Article Computer Science, Interdisciplinary Applications

Learning Bayesian Networks with the bnlearn R Package

Marco Scutari

JOURNAL OF STATISTICAL SOFTWARE (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biotechnology & Applied Microbiology

Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1

Jolanda M. Lambert et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Cell Biology

Map of differential transcript expression in the normal human large intestine

Lawrence C. LaPointe et al.

PHYSIOLOGICAL GENOMICS (2008)

Article Multidisciplinary Sciences

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

Brian V. Jones et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Biochemistry & Molecular Biology

Bile salt biotransformations by human intestinal bacteria

JM Ridlon et al.

JOURNAL OF LIPID RESEARCH (2006)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Article Gastroenterology & Hepatology

Development and validation of a new, simplified endoscopic activity score for Crohn's disease: the SES-CD

M Daperno et al.

GASTROINTESTINAL ENDOSCOPY (2004)

Article Biochemistry & Molecular Biology

The COG database: a tool for genome-scale analysis of protein functions and evolution

RL Tatusov et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)