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Long noncoding RNA TUG1 is a diagnostic factor in lung adenocarcinoma and suppresses apoptosis via epigenetic silencing of BAX
Huan Liu et al.
ONCOTARGET (2017)
Long non-coding RNA PTENP1 interacts with miR-193a-3p to suppress cell migration and invasion through the PTEN pathway in hepatocellular carcinoma
Yu-Yuan Qian et al.
ONCOTARGET (2017)
Long non-coding RNA HOXA-AS2 promotes proliferation and invasion of breast cancer by acting as a miR-520c-3p sponge
Yu Fang et al.
ONCOTARGET (2017)
Decreased expression of pseudogene PTENP1 promotes malignant behaviours and is associated with the poor survival of patients with HNSCC
Jiannan Liu et al.
SCIENTIFIC REPORTS (2017)
Natural Antisense Transcripts at the Interface between Host Genome and Mobile Genetic Elements
Hany S. Zinad et al.
FRONTIERS IN MICROBIOLOGY (2017)
RNA-Seq differential expression analysis: An extended review and a software tool
Juliana Costa-Silva et al.
PLOS ONE (2017)
Linc-ing Circulating Long Non-coding RNAs to the Diagnosis and Malignant Prediction of Intraductal Papillary Mucinous Neoplasms of the Pancreas
Jennifer B. Permuth et al.
SCIENTIFIC REPORTS (2017)
Transcriptome-wide analysis of natural antisense transcripts shows their potential role in breast cancer
Stephane Wenric et al.
SCIENTIFIC REPORTS (2017)
LncRNA ZEB2-AS1 promotes bladder cancer cell proliferation and inhibits apoptosis by regulating miR-27b
Xiaoqiang Wu et al.
BIOMEDICINE & PHARMACOTHERAPY (2017)
Circulating Long Noncoding RNA HOTAIR is an Essential Mediator of Acute Myocardial Infarction
Lu Gao et al.
CELLULAR PHYSIOLOGY AND BIOCHEMISTRY (2017)
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection
Emanuel Wyler et al.
GENOME BIOLOGY (2017)
The impact of RNA sequence library construction protocols on transcriptomic profiling of leukemia
Ashwini Kumar et al.
BMC GENOMICS (2017)
Upregulation of CCAT2 promotes cell proliferation by repressing the P15 in breast cancer
Xin Deng et al.
BIOMEDICINE & PHARMACOTHERAPY (2017)
LncRNA TUG1 influences papillary thyroid cancer cell proliferation, migration and EMT formation through targeting miR-145
Hongwei Lei et al.
ACTA BIOCHIMICA ET BIOPHYSICA SINICA (2017)
Antisense lncRNA FOXC2-AS1 promotes doxorubicin resistance in osteosarcoma by increasing the expression of FOXC2
Chun-Lin Zhang et al.
CANCER LETTERS (2017)
Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols
Susan M. Corley et al.
BMC GENOMICS (2017)
Strategies to identify natural antisense transcripts
Yulong Sun et al.
BIOCHIMIE (2017)
Long noncoding RNAs in innate immunity
Yuan Zhang et al.
CELLULAR & MOLECULAR IMMUNOLOGY (2016)
Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides
Kim A. Lennox et al.
NUCLEIC ACIDS RESEARCH (2016)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Upregulation of long non-coding RNA TUG1 correlates with poor prognosis and disease status in osteosarcoma
Bing Ma et al.
TUMOR BIOLOGY (2016)
Expression analysis of four long noncoding RNAs in breast cancer
Mostafa Iranpour et al.
TUMOR BIOLOGY (2016)
Pseudogene PTENP1 Suppresses Gastric Cancer Progression by Modulating PTEN
Xiaoqiang Guo et al.
ANTI-CANCER AGENTS IN MEDICINAL CHEMISTRY (2016)
Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome
Kaori Kashi et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
Jeremy E. Wilusz
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
Trimming of sequence reads alters RNA-Seq gene expression estimates
Claire R. Williams et al.
BMC BIOINFORMATICS (2016)
Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2
Pei-Chin Lin et al.
BMC CANCER (2016)
Circulating 'lncRNA OTTHUMT00000387022' from monocytes as a novel biomarker for coronary artery disease
Yue Cai et al.
CARDIOVASCULAR RESEARCH (2016)
Communication by Extracellular Vesicles: Where We Are and Where We Need to Go
Mercedes Tkach et al.
CELL (2016)
Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
Sophie Petropoulos et al.
CELL (2016)
Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering
Addison V. Wright et al.
CELL (2016)
Long non-coding RNA TUG1 regulates ovarian cancer proliferation and metastasis via affecting epithelial-mesenchymal transition
Defeng Kuang et al.
EXPERIMENTAL AND MOLECULAR PATHOLOGY (2016)
LncRNA TUG1 acts as a tumor suppressor in human glioma by promoting cell apoptosis
Jun Li et al.
EXPERIMENTAL BIOLOGY AND MEDICINE (2016)
Fourth Generation of Next-Generation Sequencing Technologies: Promise and Consequences
Rongqin Ke et al.
HUMAN MUTATION (2016)
Exosomal Long Noncoding RNAs are Differentially Expressed in the Cervicovaginal Lavage Samples of Cervical Cancer Patients
Jin Zhang et al.
JOURNAL OF CLINICAL LABORATORY ANALYSIS (2016)
Downregulation of the long noncoding RNA TUG1 inhibits the proliferation, migration, invasion and promotes apoptosis of renal cell carcinoma
Meng Zhang et al.
JOURNAL OF MOLECULAR HISTOLOGY (2016)
Expression Profile of Long Non-Coding RNAs in Serum of Patients with Multiple Sclerosis
Massimo Santoro et al.
JOURNAL OF MOLECULAR NEUROSCIENCE (2016)
The long noncoding RNA HOTAIR activates autophagy by upregulating ATG3 and ATG7 in hepatocellular carcinoma
Liang Yang et al.
MOLECULAR BIOSYSTEMS (2016)
Expression of ANRIL-Polycomb Complexes-CDKN2A/B/ARF Genes in Breast Tumors: Identification of a Two-Gene (EZH2/CBX7) Signature with Independent Prognostic Value
Didier Meseure et al.
MOLECULAR CANCER RESEARCH (2016)
Downregulation of ZEB2-AS1 decreased tumor growth and metastasis in hepatocellular carcinoma
Tian Lan et al.
MOLECULAR MEDICINE REPORTS (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Applications of CRISPR technologies in research and beyond
Rodolphe Barrangou et al.
NATURE BIOTECHNOLOGY (2016)
Dense transcript profiling in single cells by image correlation decoding
Ahmet F. Coskun et al.
NATURE METHODS (2016)
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea et al.
NATURE PROTOCOLS (2016)
Unique features of long non-coding RNA biogenesis and function
Jeffrey J. Quinn et al.
NATURE REVIEWS GENETICS (2016)
Insertion of an Alu element in a lncRNA leads to primate-specific modulation of alternative splicing
Shanshan Hu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
Sheel Shah et al.
NEURON (2016)
Inhibiting BACE1 to reverse synaptic dysfunctions in Alzheimer's disease
Riqiang Yan et al.
NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS (2016)
CLASS2: accurate and efficient splice variant annotation from RNA-seq reads
Li Song et al.
NUCLEIC ACIDS RESEARCH (2016)
Long non-coding RNA BACE1-AS is a novel target for anisomycin-mediated suppression of ovarian cancer stem cell proliferation and invasion
Qing Chen et al.
ONCOLOGY REPORTS (2016)
Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions
Lovorka Stojic et al.
NATURE COMMUNICATIONS (2016)
The Ensembl gene annotation system
Bronwen L. Aken et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Insertion of an Alu element in a lncRNA leads to primate-specific modulation of alternative splicing
Shanshan Hu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Salivary HOTAIR and PVT1 as novel biomarkers for early pancreatic cancer
Zijun Xie et al.
ONCOTARGET (2016)
Translin and Trax differentially regulate telomere-associated transcript homeostasis
Natalia Gomez-Escobar et al.
ONCOTARGET (2016)
The long non-coding RNA HOTAIR increases tumour growth and invasion in cervical cancer by targeting the Notch pathway
Maria Lee et al.
ONCOTARGET (2016)
lncScore: alignment-free identification of long noncoding RNA from assembled novel transcripts
Jian Zhao et al.
SCIENTIFIC REPORTS (2016)
Elevated expression of circulating miR876-5p is a specific response to severe EV71 infections
Robert Y. L. Wang et al.
SCIENTIFIC REPORTS (2016)
Circulating long non-coding HOX transcript antisense intergenic ribonucleic acid in plasma as a potential biomarker for diagnosis of breast cancer
Yi Zhang et al.
THORACIC CANCER (2016)
Long noncoding RNAs in DNA methylation: new players stepping into the old game
Yu Zhao et al.
CELL AND BIOSCIENCE (2016)
LncRNA TUG1 is upregulated and promotes cell proliferation in osteosarcoma
Feng Yun-Bo et al.
OPEN MEDICINE (2016)
Upregulation of Haploinsufficient Gene Expression in the Brain by Targeting a Long Non-coding RNA Improves Seizure Phenotype in a Model of Dravet Syndrome
J. Hsiao et al.
EBIOMEDICINE (2016)
lncRNA-RNA Interactions across the Human Transcriptome
Michel Wojciech Szczesniak et al.
PLOS ONE (2016)
Expression of the Long Non-Coding RNA HOTAIR Correlates with Disease Progression in Bladder Cancer and Is Contained in Bladder Cancer Patient Urinary Exosomes
Claudia Berrondo et al.
PLOS ONE (2016)
Single-cell analysis of long non-coding RNAs in the developing human neocortex
Siyuan John Liu et al.
GENOME BIOLOGY (2016)
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Miten Jain et al.
GENOME BIOLOGY (2016)
miR-155 in the progression of lung fibrosis in systemic sclerosis
Romy B. Christmann et al.
ARTHRITIS RESEARCH & THERAPY (2016)
LncRNA HOTAIR: A master regulator of chromatin dynamics and cancer
Arunoday Bhan et al.
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER (2015)
Suppression of hepatocellular carcinoma by baculovirus-mediated expression of long non-coding RNA PTENP1 and MicroRNA regulation
Chiu-Ling Chen et al.
BIOMATERIALS (2015)
Plasma MicroRNAs as Novel Biomarkers for Patients with Intraductal Papillary Mucinous Neoplasms of the Pancreas
Jennifer Permuth-Wey et al.
CANCER PREVENTION RESEARCH (2015)
Evaluating Robustness and Sensitivity of the NanoString Technologies nCounter Platform to Enable Multiplexed Gene Expression Analysis of Clinical Samples
Margaret H. Veldman-Jones et al.
CANCER RESEARCH (2015)
Increased expression of the long non-coding RNA ANRIL promotes lung cancer cell metastasis and correlates with poor prognosis
Ling Lin et al.
DIAGNOSTIC PATHOLOGY (2015)
Double-negative feedback loop between long non-coding RNA TUG1 and miR-145 promotes epithelial to mesenchymal transition and radioresistance in human bladder cancer cells
Jiemei Tan et al.
FEBS LETTERS (2015)
The landscape of antisense gene expression in human cancers
O. Alejandro Balbin et al.
GENOME RESEARCH (2015)
Circulating CUDR, LSINCT-5 and PTENP1 long noncoding RNAs in sera distinguish patients with gastric cancer from healthy controls
Lei Dong et al.
INTERNATIONAL JOURNAL OF CANCER (2015)
Long non-coding RNA ANRIL is upregulated in hepatocellular carcinoma and regulates cell proliferation by epigenetic silencing of KLF2
Ming-de Huang et al.
JOURNAL OF HEMATOLOGY & ONCOLOGY (2015)
Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α
Jennie Chan et al.
JOURNAL OF IMMUNOLOGY (2015)
MicroRNA molecular profiling from matched tumor and bio-fluids in bladder cancer
David A. Armstrong et al.
MOLECULAR CANCER (2015)
Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2
Ming-De Huang et al.
MOLECULAR CANCER (2015)
Ballgown bridges the gap between transcriptome assembly and expression analysis
Alyssa C. Frazee et al.
NATURE BIOTECHNOLOGY (2015)
The landscape of long noncoding RNAs in the human transcriptome
Matthew K. Iyer et al.
NATURE GENETICS (2015)
The emerging role of IncRNAs in cancer
Maite Huarte
NATURE MEDICINE (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
Je Hyuk Lee et al.
NATURE PROTOCOLS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
Antisense long noncoding RNAs regulate var gene activation in the malaria parasite Plasmodium falciparum
Inbar Amit-Avraham et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Spatially resolved, highly multiplexed RNA profiling in single cells
Kok Hao Chen et al.
SCIENCE (2015)
The Landscape of long noncoding RNA classification
Georges St Laurent et al.
TRENDS IN GENETICS (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Exosomes as divine messengers: are they the Hermes of modern molecular oncology?
C. Braicu et al.
CELL DEATH AND DIFFERENTIATION (2015)
Reproducible, Quantitative, and Flexible Molecular Subtyping of Clinical DLBCL Samples Using the NanoString nCounter System
Margaret H. Veldman-Jones et al.
CLINICAL CANCER RESEARCH (2015)
Long Noncoding RNA ANRIL Promotes Non-Small Cell Lung Cancer Cell Proliferation and Inhibits Apoptosis by Silencing KLF2 and P21 Expression
Feng-qi Nie et al.
MOLECULAR CANCER THERAPEUTICS (2015)
Towards a therapy for Angelman syndrome by targeting a long non-coding RNA
Linyan Meng et al.
NATURE (2015)
lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs
Xiu Cheng Quek et al.
NUCLEIC ACIDS RESEARCH (2015)
An update on LNCipedia: a database for annotated human lncRNA sequences
Pieter-Jan Volders et al.
NUCLEIC ACIDS RESEARCH (2015)
Optimized exosome isolation protocol for cell culture supernatant and human plasma
Richard J. Lobb et al.
JOURNAL OF EXTRACELLULAR VESICLES (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling
Wei Zhao et al.
BMC GENOMICS (2014)
Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
T. Nicolai Siegel et al.
BMC GENOMICS (2014)
HOTAIR long non-coding RNA is a negative prognostic factor not only in primary tumors, but also in the blood of colorectal cancer patients
Miroslav Svoboda et al.
CARCINOGENESIS (2014)
Mutual inhibition between YAP and SRSF1 maintains long non-coding RNA, Malat1-induced tumourigenesis in liver cancer
Jiayi Wang et al.
CELLULAR SIGNALLING (2014)
Investigation of circulating lncRNAs in B-cell neoplasms
Mustafa Isin et al.
CLINICA CHIMICA ACTA (2014)
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Hideya Kawaji et al.
GENOME RESEARCH (2014)
Life without A tail: New formats of long noncoding RNAs
Yang Zhang et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2014)
Benchtop isolation and characterization of functional exosomes by sequential filtration
Mitja L. Heinemann et al.
JOURNAL OF CHROMATOGRAPHY A (2014)
Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer
Xiang-hua Liu et al.
MOLECULAR CANCER (2014)
Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli (vol 53, pg 393, 2014)
Katsutoshi Imamura et al.
MOLECULAR CELL (2014)
An HIV-Encoded Antisense Long noncoding RNA Epigenetically Regulates Viral Transcription
Sheena Saayman et al.
MOLECULAR THERAPY (2014)
Single-cell in situ RNA profiling by sequential hybridization
Eric Lubeck et al.
NATURE METHODS (2014)
Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue
Jakob Hedegaard et al.
PLOS ONE (2014)
Highly Multiplexed Subcellular RNA Sequencing in Situ
Je Hyuk Lee et al.
SCIENCE (2014)
P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression
E-b Zhang et al.
CELL DEATH & DISEASE (2014)
Expression of the HOX genes and HOTAIR in atypical teratoid rhabdoid tumors and other pediatric brain tumors
Madhavi Chakravadhanula et al.
CANCER GENETICS (2014)
Long noncoding RNA ANRIL indicates a poor prognosis of gastric cancer and promotes tumor growth by epigenetically silencing of miR-99a/miR-449a
Er-bao Zhang et al.
ONCOTARGET (2014)
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
Charity W. Law et al.
GENOME BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Single-step isolation of extracellular vesicles by size-exclusion chromatography
Anita N. Boing et al.
JOURNAL OF EXTRACELLULAR VESICLES (2014)
Imprinted Chromatin around DIRAS3 Regulates Alternative Splicing of GNG12-AS1, a Long Noncoding RNA
Malwina Niemczyk et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
A comparison of methods for differential expression analysis of RNA-seq data
Charlotte Soneson et al.
BMC BIOINFORMATICS (2013)
The Noncoding RNA MALAT1 Is a Critical Regulator of the Metastasis Phenotype of Lung Cancer Cells
Tony Gutschner et al.
CANCER RESEARCH (2013)
Long non-coding RNA HOTAIR is an independent prognostic marker for nasopharyngeal carcinoma progression and survival
Yan Nie et al.
CANCER SCIENCE (2013)
The NeST Long ncRNA Controls Microbial Susceptibility and Epigenetic Activation of the Interferon-γ Locus
J. Antonio Gomez et al.
CELL (2013)
Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling
James Dominic Mills et al.
CURRENT GENOMICS (2013)
The rough endoplasmatic reticulum is a central nucleation site of siRNA-mediated RNA silencing
Lukas Stalder et al.
EMBO JOURNAL (2013)
The functions of natural antisense transcripts
Megan Wight et al.
ROLE OF NON-CODING RNAS IN BIOLOGY (2013)
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
Song Li et al.
GENOME RESEARCH (2013)
Posttranscriptional Gene Regulation by Long Noncoding RNA
Je-Hyun Yoon et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Salivary lncRNA as a potential marker for oral squamous cell carcinoma diagnosis
Haikuo Tang et al.
MOLECULAR MEDICINE REPORTS (2013)
In situ sequencing for RNA analysis in preserved tissue and cells
Rongqin Ke et al.
NATURE METHODS (2013)
Assessment of transcript reconstruction methods for RNA-seq
Tamara Steijger et al.
NATURE METHODS (2013)
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Simone Picelli et al.
NATURE METHODS (2013)
NON-CODING RNA Gene regulation by antisense transcription
Vicent Pelechano et al.
NATURE REVIEWS GENETICS (2013)
Bimodal expression of PHO84 is modulated by early termination of antisense transcription
Manuele Castelnuovo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
Per Johnsson et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer
K. Kim et al.
ONCOGENE (2013)
Integrated MicroRNA and mRNA Signatures Associated with Survival in Triple Negative Breast Cancer
Luciano Cascione et al.
PLOS ONE (2013)
New methods as alternative or corrective measures for the pitfalls and artifacts of reverse transcription and polymerase chain reactions (RT-PCR) in cloning chimeric or antisense-accompanied RNA
Chengfu Yuan et al.
RNA BIOLOGY (2013)
On the classification of long non-coding RNAs
Lina Ma et al.
RNA BIOLOGY (2013)
Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples
Paul A. Northcott et al.
ACTA NEUROPATHOLOGICA (2012)
RSeQC: quality control of RNA-seq experiments
Liguo Wang et al.
BIOINFORMATICS (2012)
Technique for strand-specific gene-expression analysis and monitoring of primer-independent cDNA synthesis in reverse transcription
Lin Feng et al.
BIOTECHNIQUES (2012)
Association of large noncoding RNA HOTAIR expression and its downstream intergenic CpG island methylation with survival in breast cancer
Lingeng Lu et al.
BREAST CANCER RESEARCH AND TREATMENT (2012)
Bidirectional regulation between WDR83 and its natural antisense transcript DHPS in gastric cancer
Wen-Yu Su et al.
CELL RESEARCH (2012)
A triple helix stabilizes the 3′ ends of long noncoding RNAs that lack poly(A) tails
Jeremy E. Wilusz et al.
GENES & DEVELOPMENT (2012)
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
Hidenori Tani et al.
GENOME RESEARCH (2012)
Genome-wide analysis of long noncoding RNA stability
Michael B. Clark et al.
GENOME RESEARCH (2012)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien et al.
GENOME RESEARCH (2012)
Ube3a-ATS is an atypical RNA polymerase II transcript that represses the paternal expression of Ube3a
Linyan Meng et al.
HUMAN MOLECULAR GENETICS (2012)
Silencing disease genes in the laboratory and the clinic
Jonathan K. Watts et al.
JOURNAL OF PATHOLOGY (2012)
Importance of RNA isolation methods for analysis of exosomal RNA: Evaluation of different methods
Maria Eldh et al.
MOLECULAR IMMUNOLOGY (2012)
Landscape of transcription in human cells
Sarah Djebali et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation
Ming-chun Lai et al.
MEDICAL ONCOLOGY (2012)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2012)
Cardiomyocyte Microvesicles Contain DNA/RNA and Convey Biological Messages to Target Cells
Anders Waldenstrom et al.
PLOS ONE (2012)
Flowering time control: another window to the connection between antisense RNA and chromatin
Robert Ietswaart et al.
TRENDS IN GENETICS (2012)
Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts
Marco Magistri et al.
TRENDS IN GENETICS (2012)
Impact of biofluid viscosity on size and sedimentation efficiency of the isolated microvesicles
Fatemeh Momen-Heravi et al.
FRONTIERS IN PHYSIOLOGY (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Long Noncoding RNA, Polycomb, and the Ghosts Haunting INK4b-ARF-INK4a Expression
Francesca Aguilo et al.
CANCER RESEARCH (2011)
Non-coding RNAs as regulators of gene expression and epigenetics
Minna U. Kaikkonen et al.
CARDIOVASCULAR RESEARCH (2011)
Large Intervening Non-coding RNA HOTAIR is Associated with Hepatocellular Carcinoma Progression
Y. J. Geng et al.
JOURNAL OF INTERNATIONAL MEDICAL RESEARCH (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Next-generation transcriptome assembly
Jeffrey A. Martin et al.
NATURE REVIEWS GENETICS (2011)
cis-Antisense RNA, Another Level of Gene Regulation in Bacteria
Jens Georg et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15INK4B tumor suppressor gene
Y. Kotake et al.
ONCOGENE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Thomas J. Hardcastle et al.
BMC BIOINFORMATICS (2010)
Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation
Fatih Ozsolak et al.
CELL (2010)
Self-priming of reverse transcriptase impairs strand-specific detection of dengue virus RNA
A. Tuiskunen et al.
JOURNAL OF GENERAL VIROLOGY (2010)
An Upstream Open Reading Frame and the Context of the Two AUG Codons Affect the Abundance of Mitochondrial and Nuclear RNase H1
Yutaka Suzuki et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
Vidisha Tripathi et al.
MOLECULAR CELL (2010)
Molecular Interplay of the Noncoding RNA ANRIL and Methylated Histone H3 Lysine 27 by Polycomb CBX7 in Transcriptional Silencing of INK4a
Kyoko L. Yap et al.
MOLECULAR CELL (2010)
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
Rajnish A. Gupta et al.
NATURE (2010)
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
Laura Poliseno et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
In situ detection and genotyping of individual mRNA molecules
Chatarina Larsson et al.
NATURE METHODS (2010)
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Joshua Z. Levin et al.
NATURE METHODS (2010)
Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns
Oleg V. Grinchuk et al.
NUCLEIC ACIDS RESEARCH (2010)
Evidence for natural antisense transcript-mediated inhibition of microRNA function
Mohammad Ali Faghihi et al.
GENOME BIOLOGY (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
Long noncoding RNAs: functional surprises from the RNA world
Jeremy E. Wilusz et al.
GENES & DEVELOPMENT (2009)
Magnetic purification of biotinylated cDNA removes false priming and ensures strand-specificity of RT-PCR for enteroviral RNAs
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