4.5 Review Book Chapter

Heterogeneity among enhancer RNAs: origins, consequences and perspectives

Related references

Note: Only part of the references are listed.
Review Genetics & Heredity

Determinants of enhancer and promoter activities of regulatory elements

Robin Andersson et al.

NATURE REVIEWS GENETICS (2020)

Article Biochemistry & Molecular Biology

Pervasive and CpG-dependent promoter-like characteristics of transcribed enhancers

Robin Steinhaus et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Multidisciplinary Sciences

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Jill E. Moore et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Enhancer RNAs predict enhancer-gene regulatory links and are critical for enhancer function in neuronal systems

Nancy V. N. Carullo et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Multidisciplinary Sciences

Enhancer dependence of cell-type-specific gene expression increases with developmental age

Wenqing Cai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biology

Splicing of enhancer-associated lincRNAs contributes to enhancer activity

Jennifer Y. Tan et al.

LIFE SCIENCE ALLIANCE (2020)

Article Genetics & Heredity

NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements

Shigeki Hirabayashi et al.

NATURE GENETICS (2019)

Article Cell Biology

Widespread transcriptional pausing and elongation control at enhancers

Telmo Henriques et al.

GENES & DEVELOPMENT (2018)

Article Biochemistry & Molecular Biology

A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans

Pei-Fang Tsai et al.

MOLECULAR CELL (2018)

Review Multidisciplinary Sciences

The CRISPR tool kit for genome editing and beyond

Mazhar Adli

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Enhancer redundancy provides phenotypic robustness in mammalian development

Marco Osterwalder et al.

NATURE (2018)

Article Biochemistry & Molecular Biology

RNAs interact with BRD4 to promote enhanced chromatin engagement and transcription activation

Homa Rahnamoun et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Production of Spliced Long Noncoding RNAs Specifies Regions with Increased Enhancer Activity

Noa Gil et al.

CELL SYSTEMS (2018)

Article Biochemistry & Molecular Biology

Orphan CpG islands define a novel class of highly active enhancers

Joshua S. K. Bell et al.

EPIGENETICS (2017)

Article Multidisciplinary Sciences

An atlas of human long non-coding RNAs with accurate 5′ ends

Chung-Chau Hon et al.

NATURE (2017)

Review Genetics & Heredity

Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability

Gerson Rothschild et al.

TRENDS IN GENETICS (2017)

Editorial Material Genetics & Heredity

On the Origin of lncRNAs: Missing Link Found

Joaquin M. Espinosa

TRENDS IN GENETICS (2017)

Article Biotechnology & Applied Microbiology

Bidirectional transcription initiation marks accessible chromatin and is not specific to enhancers

Robert S. Young et al.

GENOME BIOLOGY (2017)

Article Biochemistry & Molecular Biology

YY1 Is a Structural Regulator of Enhancer-Promoter Loops

Abraham S. Weintraub et al.

Article Biochemistry & Molecular Biology

RNA Binding to CBP Stimulates Histone Acetylation and Transcription

Daniel A. Bose et al.

Review Biochemistry & Molecular Biology

Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution

Hannah K. Long et al.

Editorial Material Biochemistry & Molecular Biology

Revisiting IncRNAs: How Do You Know Yours Is Not an eRNA?

Joaquin M. Espinosa

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

Unlinking an lncRNA from Its Associated cis Element

Vikram R. Paralkar et al.

MOLECULAR CELL (2016)

Article Multidisciplinary Sciences

Local regulation of gene expression by lncRNA promoters, transcription and splicing

Jesse M. Engreitz et al.

NATURE (2016)

Review Genetics & Heredity

Enhancers as non-coding RNA transcription units: recent insights and future perspectives

Wenbo Li et al.

NATURE REVIEWS GENETICS (2016)

Article Biochemistry & Molecular Biology

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

Takayuki Nojima et al.

Review Biochemistry & Molecular Biology

Architectural and Functional Commonalities between Enhancers and Promoters

Tae-Kyung Kim et al.

Article Biochemistry & Molecular Biology

RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity

Evangelos Pefanis et al.

Article Cardiac & Cardiovascular Systems

CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis

Samir Ounzain et al.

JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY (2015)

Article Biochemistry & Molecular Biology

Condensin I and II Complexes License Full Estrogen Receptor α-Dependent Enhancer Activation

Wenbo Li et al.

MOLECULAR CELL (2015)

Letter Biochemistry & Molecular Biology

Human Gene Promoters Are Intrinsically Bidirectional

Robin Andersson et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Integrator mediates the biogenesis of enhancer RNAs

Fan Lai et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers

Isaac B. Hilton et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display

David M. Shechner et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

RNA transcribed from a distal enhancer is required for activating the chromatin at the promoter of the gonadotropin α-subunit gene

Lilach Pnueli et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Inflammation-sensitive super enhancers form domains of coordinately regulated enhancer RNAs

Nasun Hah et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Transcription factor trapping by RNA in gene regulatory elements

Alla A. Sigova et al.

SCIENCE (2015)

Review Genetics & Heredity

A unified architecture of transcriptional regulatory elements

Robin Andersson et al.

TRENDS IN GENETICS (2015)

Article Biochemistry & Molecular Biology

Enhancer RNA Facilitates NELF Release from Immediate Early Genes

Katie Schaukowitch et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

An atlas of active enhancers across human cell types and tissues

Robin Andersson et al.

NATURE (2014)

Article Multidisciplinary Sciences

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation

Chen-Lin Hsieh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Biochemistry & Molecular Biology

Enhancer RNAs and regulated transcriptional programs

Michael T. Y. Lam et al.

TRENDS IN BIOCHEMICAL SCIENCES (2014)

Article Multidisciplinary Sciences

Nuclear stability and transcriptional directionality separate functionally distinct RNA species

Robin Andersson et al.

NATURE COMMUNICATIONS (2014)

Review Genetics & Heredity

Enhancer alterations in cancer: a source for a cell identity crisis

Ken J. Kron et al.

GENOME MEDICINE (2014)

Review Biochemistry & Molecular Biology

Divergent Transcription: A Driving Force for New Gene Origination?

Xuebing Wu et al.

Article Biochemistry & Molecular Biology

Super-Enhancers in the Control of Cell Identity and Disease

Denes Hnisz et al.

Article Biochemistry & Molecular Biology

Enhancer transcripts mark active estrogen receptor binding sites

Nasun Hah et al.

GENOME RESEARCH (2013)

Review Biochemistry & Molecular Biology

Dealing with Pervasive Transcription

Torben Heick Jensen et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals

Telmo Henriques et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription

Carlos A. Melo et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

Kambiz Mousavi et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription

Minna U. Kaikkonen et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription

Michael T. Y. Lam et al.

NATURE (2013)

Article Multidisciplinary Sciences

Promoter directionality is controlled by U1 snRNP and polyadenylation signals

Albert E. Almada et al.

NATURE (2013)

Article Biochemical Research Methods

CRISPR RNA-guided activation of endogenous human genes

Morgan L. Maeder et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

Alla A. Sigova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Cell Biology

Enhancer and promoter interactions-long distance calls

Ivan Krivega et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)

Article Multidisciplinary Sciences

Landscape of transcription in human cells

Sarah Djebali et al.

NATURE (2012)

Review Cell Biology

Long non-coding RNAs and enhancers

Ulf Andersson Orom et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2011)

Article Biochemistry & Molecular Biology

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters

Frederic Koch et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Multidisciplinary Sciences

Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome

Ryan A. Flynn et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

Long Noncoding RNAs with Enhancer-like Function in Human Cells

Ulf Andersson Orom et al.

Article Multidisciplinary Sciences

Widespread transcription at neuronal activity-regulated enhancers

Tae-Kyung Kim et al.

NATURE (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

Francesca De Santa et al.

PLOS BIOLOGY (2010)

Review Cell Biology

Origins and activities of the eukaryotic exosome

Soren Lykke-Andersen et al.

JOURNAL OF CELL SCIENCE (2009)

Article Multidisciplinary Sciences

RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters

Pascal Preker et al.

SCIENCE (2008)

Review Biochemistry & Molecular Biology

The connection between transcription and genomic instability

A Aguilera

EMBO JOURNAL (2002)