Related references
Note: Only part of the references are listed.Genome- and Community-Level Interaction Insights in Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment
Zhichao Zhou et al.
MSYSTEMS (2020)
Evidence in the Japan Sea of microdolomite mineralization within gas hydrate microbiomes
Glen T. Snyder et al.
SCIENTIFIC REPORTS (2020)
Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres
Anirban Chakraborty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Mainly on the Plane: Deep Subsurface Bacterial Proteins Bind and Alter Clathrate Structure
Abigail M. Johnson et al.
CRYSTAL GROWTH & DESIGN (2020)
Global diversity of microbial communities in marine sediment
Tatsuhiko Hoshino et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor
Aurele Vuillemin et al.
MBIO (2020)
Isolation of a member of the candidate phylum 'Atribacteria' reveals a unique cell membrane structure
Taiki Katayama et al.
NATURE COMMUNICATIONS (2020)
In situ development of a methanotrophic microbiome in deep-sea sediments
S. E. Ruff et al.
ISME JOURNAL (2019)
Microbial Community Diversity Within Sediments From Two Geographically Separated Hadal Trenches
Logan M. Peoples et al.
FRONTIERS IN MICROBIOLOGY (2019)
Pluto's ocean is capped and insulated by gas hydrates
Shunichi Kamata et al.
NATURE GEOSCIENCE (2019)
Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments
Jordan T. Bird et al.
MBIO (2019)
Anaerobic hydrocarbon degradation in candidate phylum 'Atribacteria' (JS1) inferred from genomics
Yi-Fan Liu et al.
ISME JOURNAL (2019)
Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments
Friederike Grundger et al.
SCIENTIFIC REPORTS (2019)
The EFI Web Resource for Genomic Enzymology Tools: Leveraging Protein, Genome, and Metagenome Databases to Discover Novel Enzymes and Metabolic Pathways
Remi Zallot et al.
BIOCHEMISTRY (2019)
Double-slit photoelectron interference in strong-field ionization of the neon dimer
Maksim Kunitski et al.
NATURE COMMUNICATIONS (2019)
Predicted microbial secretomes and their target substrates in marine sediment
William D. Orsi et al.
NATURE MICROBIOLOGY (2018)
Salt-Induced Stress Stimulates a Lipoteichoic Acid-Specific Three-Component Glycosylation System in Staphylococcus aureus
Kelvin Kho et al.
JOURNAL OF BACTERIOLOGY (2018)
Global Analysis of the E. coli Toxin MazF Reveals Widespread Cleavage of mRNA and the Inhibition of rRNA Maturation and Ribosome Biogenesis
Peter H. Culviner et al.
MOLECULAR CELL (2018)
Tripartite ATP-Independent Periplasmic (TRAP) Transporters and Tripartite Tricarboxylate Transporters (TTT): From Uptake to Pathogenicity
Leonardo T. Rosa et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments
Yung Mi Lee et al.
FRONTIERS IN MICROBIOLOGY (2018)
Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
Alex W. Hernsdorf et al.
ISME JOURNAL (2017)
The interaction of climate change and methane hydrates
Carolyn D. Ruppel et al.
REVIEWS OF GEOPHYSICS (2017)
Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes
Tatsuhiko Hoshino et al.
FRONTIERS IN MICROBIOLOGY (2017)
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir et al.
MSYSTEMS (2017)
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics
Masaru K. Nobu et al.
ISME JOURNAL (2016)
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
Chris Greening et al.
ISME JOURNAL (2016)
2016 update of the PRIDE database and its related tools
Juan Antonio Vizcaino et al.
NUCLEIC ACIDS RESEARCH (2016)
The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor
Gerrit J. Schut et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2016)
Phylogenetic diversity of microbial communities of the Posolsk Bank bottom sediments, Lake Baikal
S. M. Chernitsyna et al.
MICROBIOLOGY (2016)
The physiology of growth arrest: uniting molecular and environmental microbiology
Megan Bergkessel et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs
Ping Hu et al.
MBIO (2016)
Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
Rebecca A. Daly et al.
NATURE MICROBIOLOGY (2016)
HydDB: A web tool for hydrogenase classification and analysis
Dan Sondergaard et al.
SCIENTIFIC REPORTS (2016)
Methane Clathrates in the Solar System
Olivier Mousis et al.
ASTROBIOLOGY (2015)
Experimental Strategies for Functional Annotation and Metabolism Discovery: Targeted Screening of Solute Binding Proteins and Unbiased Panning of Metabolomes
Matthew W. Vetting et al.
BIOCHEMISTRY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor
Masaru K. Nobu et al.
ISME JOURNAL (2015)
Tripartite ATP-independent Periplasmic (TRAP) Transporters Use an Arginine-mediated Selectivity Filter for High Affinity Substrate Binding
Marcus Fischer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Bacterial responses to osmotic challenges
Janet M. Wood
JOURNAL OF GENERAL PHYSIOLOGY (2015)
A Deeper Look into Comet-Implementation and Features
Jimmy K. Eng et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2015)
Abundant Atribacteria in deep marine sediment from the Adelie Basin, Antarctica
Stephanie A. Carr et al.
FRONTIERS IN MICROBIOLOGY (2015)
Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
Stephen Nayfach et al.
GENOME BIOLOGY (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
Methane Hydrates in Nature-Current Knowledge and Challenges
Tim Collett et al.
JOURNAL OF CHEMICAL AND ENGINEERING DATA (2015)
Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake
Esther A. Gies et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Proton/sodium pumping pyrophosphatases: the last of the primary ion pumps
Jia-Yin Tsai et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Distinct microbial communities thriving in gas hydrate-associated sediments from the eastern Japan Sea
Katsunori Yanagawa et al.
JOURNAL OF ASIAN EARTH SCIENCES (2014)
Distributions and assemblages of microbial communities along a sediment core retrieved from a potential hydrate-bearing region offshore southwestern Taiwan
Li-Hung Lin et al.
JOURNAL OF ASIAN EARTH SCIENCES (2014)
A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions
R. John Parkes et al.
MARINE GEOLOGY (2014)
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Pablo Yarza et al.
NATURE REVIEWS MICROBIOLOGY (2014)
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2014)
A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
Seth D. Axen et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes
Mikihiko Kawai et al.
FRONTIERS IN MICROBIOLOGY (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Reactive iron and manganese distributions in seabed sediments near small mountainous rivers off Oregon and California (USA)
Moutusi Roy et al.
CONTINENTAL SHELF RESEARCH (2013)
Biogeographical Distribution and Diversity of Bacterial Communities in Surface Sediments of the South China Sea
Li Tao et al.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke et al.
NATURE (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Comet: An open-source MS/MS sequence database search tool
Jimmy K. Eng et al.
PROTEOMICS (2013)
Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies
Carrie D. Nicora et al.
PROTEOMICS (2013)
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
Jeremy A. Dodsworth et al.
NATURE COMMUNICATIONS (2013)
Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal
Vitaly V. Kadnikov et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
High abundance of JS-1-and Chloroflexi-related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR
Anna Blazejak et al.
FEMS MICROBIOLOGY ECOLOGY (2010)
Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry
Pawel Ostasiewicz et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Ocean methane hydrates as a slow tipping point in the global carbon cycle
David Archer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Clathrate Hydrates in Nature
Keith C. Hester et al.
Annual Review of Marine Science (2008)
Prokaryotic biodiversity and activity in the deep subseafloor biosphere
John C. Fry et al.
FEMS MICROBIOLOGY ECOLOGY (2008)
Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE
Gordon Webster et al.
FEMS MICROBIOLOGY ECOLOGY (2007)
Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink
Helge Niemann et al.
NATURE (2006)
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin
F Inagaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
CJ Newberry et al.
ENVIRONMENTAL MICROBIOLOGY (2004)
Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine Sediments
G Webster et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Differential regulation of soluble and membrane-bound inorganic pyrophosphatases in the photosynthetic bacterium Rhodospirillum rubrum provides insights into pyrophosphate-based stress bioenergetics
RL López-Marqués et al.
JOURNAL OF BACTERIOLOGY (2004)
Three-dimensional distribution of gas hydrate beneath southern Hydrate Ridge:: constraints from ODP Leg 204
AM Tréhu et al.
EARTH AND PLANETARY SCIENCE LETTERS (2004)
Co-existence of gas hydrate, free gas, and brine within the regional gas hydrate stability zone at Hydrate Ridge (Oregon margin):: evidence from prolonged degassing of a pressurized core
AV Milkov et al.
EARTH AND PLANETARY SCIENCE LETTERS (2004)
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
F Inagaki et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Worldwide distribution of deep-water fluid venting and potential occurrences of gas hydrate accumulations
LL Mazurenko et al.
GEO-MARINE LETTERS (2003)
Compatible solutes of organisms that live in hot saline environments
H Santos et al.
ENVIRONMENTAL MICROBIOLOGY (2002)
Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin
DW Reed et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Bacteria and Archaea physically associated with Gulf of Mexico gas hydrates
BD Lanoil et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Share Paper
