4.2 Review

Shotgun proteomics of bacterial pathogens: advances, challenges and clinical implications

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Proteomic profile of dormancy within Staphylococcus epidermidis biofilms using iTRAQ and label-free strategies

Virginia Carvalhais et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2015)

Review Microbiology

Global analysis of bacterial membrane proteins and their modifications

Boumediene Soufi et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2015)

Review Biochemical Research Methods

The role of protein and peptide separation before mass spectrometry analysis in clinical proteomics

Serena Camerini et al.

JOURNAL OF CHROMATOGRAPHY A (2015)

Article Multidisciplinary Sciences

Unusual biology across a group comprising more than 15% of domain Bacteria

Christopher T. Brown et al.

NATURE (2015)

Article Multidisciplinary Sciences

Stochastic induction of persister cells by HipA through (p)ppGpp-mediated activation of mRNA endonucleases

Elsa Germain et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Systematic profiling of the bacterial phosphoproteome reveals bacterium- specific features of phosphorylation

Miao-Hsia Lin et al.

SCIENCE SIGNALING (2015)

Review Immunology

Purification and proteomics of pathogen-modified vacuoles and membranes

Jo-Ana Herweg et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2015)

Article Immunology

Proteomic analyses of iron-responsive, Clp-dependent changes in Staphylococcus aureus

Allison J. Farrand et al.

PATHOGENS AND DISEASE (2015)

Article Biochemistry & Molecular Biology

Systematic profiling of the bacterial phosphoproteome reveals bacterium- specific features of phosphorylation

Miao-Hsia Lin et al.

SCIENCE SIGNALING (2015)

Article Infectious Diseases

Reducing time to identification of positive blood cultures with MALDI-TOF MS analysis after a 5-h subculture

A. Verroken et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2015)

Review Biochemistry & Molecular Biology

Molecular Mechanisms Underlying Bacterial Persisters

Etienne Maisonneuve et al.

Review Cell Biology

The natural alternative: protozoa as cellular models for Legionella infection

Christine Hoffmann et al.

CELLULAR MICROBIOLOGY (2014)

Review Biochemical Research Methods

Neisseria proteomics for antigen discovery and vaccine development

Myron Christodoulides

EXPERT REVIEW OF PROTEOMICS (2014)

Article Microbiology

The phosphoproteome and its physiological dynamics in Staphylococcus aureus

Katrin Baesell et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2014)

Article Biochemical Research Methods

Label-Free Quantitative Proteomics Analysis of Antibiotic Response in Staphylococcus aureus to Oxacillin

Xiaofen Liu et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Review Biochemical Research Methods

Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics

Navin Rauniyar et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Review Biochemical Research Methods

Proteome studies of bacterial antibiotic resistance mechanisms

Iosif Vranakis et al.

JOURNAL OF PROTEOMICS (2014)

Review Biochemical Research Methods

Metaproteomics of our microbiome - Developing insight in function and activity in man and model systems

Carolin A. Kolmeder et al.

JOURNAL OF PROTEOMICS (2014)

Article Biochemical Research Methods

The One Hour Yeast Proteome

Alexander S. Hebert et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemical Research Methods

Quantitative Mass Spectrometry Reveals Plasticity of Metabolic Networks in Mycobacterium smegmatis

Tarun Chopra et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemical Research Methods

Quantitative Phosphoproteome Analysis of Bacillus subtilis Reveals Novel Substrates of the Kinase PrkC and Phosphatase PrpC

Vaishnavi Ravikumar et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemical Research Methods

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Juergen Cox et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Multidisciplinary Sciences

Mycobacterium tuberculosis supports protein tyrosine phosphorylation

Ulrike Kusebauch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Microbiology

Global proteome analysis of vancomycin stress in Staphylococcus aureus

Bernd Hessling et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2013)

Article Biochemical Research Methods

Global Dynamics of the Escherichia coli Proteome and Phosphoproteome During Growth in Minimal Medium

Nelson C. Soares et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemical Research Methods

A systematic quantitative proteomic examination of multidrug resistance in Acinetobacter baumannii

Sidharth Chopra et al.

JOURNAL OF PROTEOMICS (2013)

Article Biochemical Research Methods

Proteomic Profiling of Mycobacterium tuberculosis Identifies Nutrient-starvation-responsive Toxin-antitoxin Systems

Jakob Albrethsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2013)

Review Biochemistry & Molecular Biology

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis

Thilo Muth et al.

MOLECULAR BIOSYSTEMS (2013)

Article Biochemistry & Molecular Biology

Molecular Mechanism of Bacterial Persistence by HipA

Elsa Germain et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli

Brian T. Weinert et al.

MOLECULAR CELL (2013)

Article Biochemical Research Methods

Investigation of Rifampicin Resistance Mechanisms in Brucella abortus Using MS-Driven Comparative Proteomics

Vassilios Sandalakis et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biochemical Research Methods

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics

Amelia C. Peterson et al.

MOLECULAR & CELLULAR PROTEOMICS (2012)

Article Biochemistry & Molecular Biology

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium

Vera van Noort et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Biochemical Research Methods

An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap

Jan Muntel et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2012)

Article Multidisciplinary Sciences

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes

Christofer Karlsson et al.

NATURE COMMUNICATIONS (2012)

Review Microbiology

Impact of phosphoproteomics on studies of bacterial physiology

Ivan Mijakovic et al.

FEMS MICROBIOLOGY REVIEWS (2012)

Article Microbiology

Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440

Sarah Frank et al.

FEMS MICROBIOLOGY LETTERS (2011)

Article Microbiology

MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages

Manuel Wolters et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms

Hector A. Saka et al.

MOLECULAR MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Bacterial persistence by RNA endonucleases

Etienne Maisonneuve et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Biochemical Research Methods

Site-specific analysis of bacterial phosphoproteomes

Boris Macek et al.

PROTEOMICS (2011)

Article Biochemical Research Methods

Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa

Dong-Sic Choi et al.

PROTEOMICS (2011)

Article Genetics & Heredity

Bacterial Phosphoproteomic Analysis Reveals the Correlation Between Protein Phosphorylation and Bacterial Pathogenicity

Ruiguang Ge et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2011)

Review Microbiology

Persister Cells

Kim Lewis

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)

Article Biotechnology & Applied Microbiology

Double-Blind Characterization of Non-Genome-Sequenced Bacteria by Mass Spectrometry-Based Proteomics

Rabih E. Jabbour et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemical Research Methods

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis

Boumediene Soufi et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Phosphoproteomic Analysis Reveals the Multiple Roles of Phosphorylation in Pathogenic Bacterium Streptococcus pneumoniae

Xuesong Sun et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Multidisciplinary Sciences

Portrait of a Pathogen: The Mycobacterium tuberculosis Proteome In Vivo

Nicole A. Kruh et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases

Sladjana Prisic et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

Andreas Otto et al.

NATURE COMMUNICATIONS (2010)

Article Biochemistry & Molecular Biology

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

Paola Picotti et al.

Article Ecology

Shotgun metaproteomics of the human distal gut microbiota

Nathan C. Verberkmoes et al.

ISME JOURNAL (2009)

Article Biochemical Research Methods

Global Proteome Analysis of Leptospira interrogans

Azad Eshghi et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Surfome Analysis as a Fast Track to Vaccine Discovery

Francesco Doro et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

Phosphoproteomics of Klebsiella pneumoniae NTUH-K2044 Reveals a Tight Link between Tyrosine Phosphorylation and Virulence

Miao-Hsia Lin et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Multidisciplinary Sciences

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

Johan Malmstroem et al.

NATURE (2009)

Article Biochemical Research Methods

Visual proteomics of the human pathogen Leptospira interrogans

Martin Beck et al.

NATURE METHODS (2009)

Article Biochemical Research Methods

Universal sample preparation method for proteome analysis

Jacek R. Wisniewski et al.

NATURE METHODS (2009)

Article Biochemical Research Methods

The proteome of Salmonella Typhimurium grown under in vivo-mimicking conditions

Kathleen A. J. Sonck et al.

PROTEOMICS (2009)

Article Biochemical Research Methods

Ser/Thr/Tyr Phosphoproteome analysis of pathogenic and non-pathogenic Pseudomonas species

Ayshwarya Ravichandran et al.

PROTEOMICS (2009)

Article Pharmacology & Pharmacy

Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications

Boris Macek et al.

Annual Review of Pharmacology and Toxicology (2008)

Review Pharmacology & Pharmacy

Proteomics of bacterial pathogens

Phillip Cash

EXPERT OPINION ON DRUG DISCOVERY (2008)

Review Biochemical Research Methods

Phosphoproteomics in bacteria: towards a systemic understanding of bacterial phosphorylation networks

Carsten Jers et al.

EXPERT REVIEW OF PROTEOMICS (2008)

Article Biochemical Research Methods

Proteomics analysis of the causative agent of typhoid fever

Charles Ansong et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

Vinzenz Lange et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Multidisciplinary Sciences

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

Lyris M. F. de Godoy et al.

NATURE (2008)

Article Biochemical Research Methods

Phosphoproteome analysis of E-coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

Boris Macek et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Biochemical Research Methods

The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

Boris Macek et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions

Joshua N. Adkins et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Multidisciplinary Sciences

Robust Salmonella metabolism limits possibilities for new antimicrobials

D Becker et al.

NATURE (2006)

Article Biotechnology & Applied Microbiology

Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome

MJ Rodríguez-Ortega et al.

NATURE BIOTECHNOLOGY (2006)

Review Multidisciplinary Sciences

Host-bacterial mutualism in the human intestine

F Bäckhed et al.

SCIENCE (2005)