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YY1 Is a Structural Regulator of Enhancer-Promoter Loops
Abraham S. Weintraub et al.
CELL (2017)
Single-cell Hi-C bridges microscopy and genome-wide sequencing approaches to study 3D chromatin organization
Sergey V. Ulianov et al.
BIOESSAYS (2017)
Multiscale 3D Genome Rewiring during Mouse Neural Development
Boyan Bonev et al.
CELL (2017)
Cohesin Loss Eliminates All Loop Domains
Suhas S. P. Rao et al.
CELL (2017)
Chromosome contacts in activated T cells identify autoimmune disease candidate genes
Oliver S. Burren et al.
GENOME BIOLOGY (2017)
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
Elphege P. Nora et al.
CELL (2017)
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
Bas van Steensel et al.
CELL (2017)
PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation
Sara Cruz-Molina et al.
CELL STEM CELL (2017)
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
Clemens B. Hug et al.
CELL (2017)
A Phase Separation Model for Transcriptional Control
Denes Hnisz et al.
CELL (2017)
Multiplexed analysis of chromosome conformation at vastly improved sensitivity
James O. J. Davies et al.
NATURE METHODS (2016)
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Biola M. Javierre et al.
CELL (2016)
Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk
Ashley K. Tehranchi et al.
CELL (2016)
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Lu Chen et al.
CELL (2016)
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
Diego Adhemar Jaitin et al.
CELL (2016)
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
Atray Dixit et al.
CELL (2016)
A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
Britt Adamson et al.
CELL (2016)
Enhancer Control of Transcriptional Bursting
Takashi Fukaya et al.
CELL (2016)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
Rongxin Fang et al.
CELL RESEARCH (2016)
3D Chromosome Regulatory Landscape of Human Pluripotent Cells
Xiong Ji et al.
CELL STEM CELL (2016)
Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks
Enrico Cannavo et al.
CURRENT BIOLOGY (2016)
The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
Orsolya Symmons et al.
DEVELOPMENTAL CELL (2016)
High-throughput functional comparison of promoter and enhancer activities
Thomas A. Nguyen et al.
GENOME RESEARCH (2016)
ZNF143 Is Involved in CTCF-Mediated Chromatin Interactions by Cooperation with Cohesin and Other Partners
B. -Y. Ye et al.
MOLECULAR BIOLOGY (2016)
The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation
Makiko Iwafuchi-Doi et al.
MOLECULAR CELL (2016)
Chromatin Domains: The Unit of Chromosome Organization
Jesse R. Dixon et al.
MOLECULAR CELL (2016)
Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
Caroline R. Bartman et al.
MOLECULAR CELL (2016)
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Jesse M. Engreitz et al.
NATURE (2016)
Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors
Justin Crocker et al.
NATURE GENETICS (2016)
Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters
Yun Chen et al.
NATURE GENETICS (2016)
Hierarchy within the mammary STAT5-driven Wap super-enhancer
Ha Youn Shin et al.
NATURE GENETICS (2016)
Genetic dissection of the α-globin super-enhancer in vivo
Deborah Hay et al.
NATURE GENETICS (2016)
Histone H3 globular domain acetylation identifies a new class of enhancers
Madapura M. Pradeepa et al.
NATURE GENETICS (2016)
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
Tsung-Han S. Hsieh et al.
NATURE METHODS (2016)
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
Maxwell R. Mumbach et al.
NATURE METHODS (2016)
Epstein-Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation
Jun Liang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Systematic mapping of functional enhancer-promoter connections with CRISPR interference
Charles P. Fulco et al.
SCIENCE (2016)
Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors
Muhammad A. Zabidi et al.
TRENDS IN GENETICS (2016)
Breaking TADs: How Alterations of Chromatin Domains Result in Disease
Dario G. Lupianez et al.
TRENDS IN GENETICS (2016)
Cajal bodies are linked to genome conformation
Qiuyan Wang et al.
NATURE COMMUNICATIONS (2016)
Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg et al.
CELL REPORTS (2016)
A Hox Transcription Factor Collective Binds a Highly Conserved Distal-less cis-Regulatory Module to Generate Robust Transcriptional Outcomes
Juli D. Uhl et al.
PLOS GENETICS (2016)
RNA Polymerase II cluster dynamics predict mRNA output in living cells
Won-Ki Cho et al.
ELIFE (2016)
GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler
Motoki Takaku et al.
GENOME BIOLOGY (2016)
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
Nina Koenecke et al.
GENOME BIOLOGY (2016)
Closing the loop: 3C versus DNA FISH
Luca Giorgetti et al.
GENOME BIOLOGY (2016)
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Jonathan Cairns et al.
GENOME BIOLOGY (2016)
Enhancers, enhancers - from their discovery to today's universe of transcription enhancers
Walter Schaffner
BIOLOGICAL CHEMISTRY (2015)
Functionally conserved enhancers with divergent sequences in distant vertebrates
Song Yang et al.
BMC GENOMICS (2015)
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
Fabian Grubert et al.
CELL (2015)
Enhancer Evolution across 20 Mammalian Species
Diego Villar et al.
CELL (2015)
Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness
Justin Crocker et al.
CELL (2015)
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans
Sebastian M. Waszak et al.
CELL (2015)
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
Tsung-Han S. Hsieh et al.
CELL (2015)
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
Dario G. Lupianez et al.
CELL (2015)
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
Ya Guo et al.
CELL (2015)
The Role of Chromosome Domains in Shaping the Functional Genome
Tom Sexton et al.
CELL (2015)
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
Elizabeth Ing-Simmons et al.
GENOME RESEARCH (2015)
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
Katharine N. Schulz et al.
GENOME RESEARCH (2015)
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
Stefan Schoenfelder et al.
GENOME RESEARCH (2015)
CTCF Binding Polarity Determines Chromatin Looping
Elzo de Wit et al.
MOLECULAR CELL (2015)
Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles
Timothy J. Nott et al.
MOLECULAR CELL (2015)
Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon et al.
NATURE (2015)
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
Isaac B. Hilton et al.
NATURE BIOTECHNOLOGY (2015)
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
Stefan Schoenfelder et al.
NATURE GENETICS (2015)
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
Borbala Mifsud et al.
NATURE GENETICS (2015)
The Mediator complex: a central integrator of transcription
Benjamin L. Allen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
Adrian L. Sanborn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics
Shana Elbaum-Garfinkle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Suboptimization of developmental enhancers
Emma K. Farley et al.
SCIENCE (2015)
Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci
Paul Martin et al.
NATURE COMMUNICATIONS (2015)
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
Brian J. Beliveau et al.
NATURE COMMUNICATIONS (2015)
Cross-Population Joint Analysis of eQTLs: Fine Mapping and Functional Annotation
Xiaoquan Wen et al.
PLOS GENETICS (2015)
Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo
Jacques P. Bothma et al.
ELIFE (2015)
Regulation of gene transcription by Polycomb proteins
Sergi Aranda et al.
SCIENCE ADVANCES (2015)
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
Muhammad A. Zabidi et al.
NATURE (2015)
ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters
Swneke D. Bailey et al.
NATURE COMMUNICATIONS (2015)
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
Xiaomin Bao et al.
GENOME BIOLOGY (2015)
Liquid-Liquid Phase Separation in Biology
Anthony A. Hyman et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30 (2014)
Spurious transcription factor binding: Non-functional or genetically redundant?
Mikhail Spivakov
BIOESSAYS (2014)
Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
Wulan Deng et al.
CELL (2014)
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
Jiji Chen et al.
CELL (2014)
Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
Eirene Markenscoff-Papadimitriou et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen et al.
CELL (2014)
Role of LDB1 in the transition from chromatin looping to transcription activation
Ivan Krivega et al.
GENES & DEVELOPMENT (2014)
Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features
J. Omar Yanez-Cuna et al.
GENOME RESEARCH (2014)
Genome-wide map of regulatory interactions in the human genome
Nastaran Heidari et al.
GENOME RESEARCH (2014)
High-throughput functional testing of ENCODE segmentation predictions
Jamie C. Kwasnieski et al.
GENOME RESEARCH (2014)
An etiologic regulatory mutation in IRF6 with loss- and gain-of-function effects
Walid D. Fakhouri et al.
HUMAN MOLECULAR GENETICS (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
Enhancer loops appear stable during development and are associated with paused polymerase
Yad Ghavi-Helm et al.
NATURE (2014)
Obesity-associated variants within FTO form long-range functional connections with IRX3
Scott Smemo et al.
NATURE (2014)
Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution
Cosmas D. Arnold et al.
NATURE GENETICS (2014)
Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
Jim R. Hughes et al.
NATURE GENETICS (2014)
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
Leighton J. Core et al.
NATURE GENETICS (2014)
Dynamic regulation of transcriptional states by chromatin and transcription factors
Ty C. Voss et al.
NATURE REVIEWS GENETICS (2014)
Cryptic genetic variation: evolution's hidden substrate
Annalise B. Paaby et al.
NATURE REVIEWS GENETICS (2014)
Transcriptional enhancers: from properties to genome-wide predictions
Daria Shlyueva et al.
NATURE REVIEWS GENETICS (2014)
BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones
Tomohiko Kanno et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities
A. Raja Banerjee et al.
NUCLEIC ACIDS RESEARCH (2014)
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
Jessica Zuin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation
Chen-Lin Hsieh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
Nicolas Lonfat et al.
SCIENCE (2014)
Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression
Benjamin P. Fairfax et al.
SCIENCE (2014)
Nuclear stability and transcriptional directionality separate functionally distinct RNA species
Robin Andersson et al.
NATURE COMMUNICATIONS (2014)
Control of Embryonic Stem Cell Identity by BRD4-Dependent Transcriptional Elongation of Super-Enhancer-Associated Pluripotency Genes
Raffaella Di Micco et al.
CELL REPORTS (2014)
Enhancer variants: evaluating functions in common disease
Olivia Corradin et al.
GENOME MEDICINE (2014)
Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
Nicholas E. Banovich et al.
PLOS GENETICS (2014)
Disruption of Autoregulatory Feedback by a Mutation in a Remote, Ultraconserved PAX6 Enhancer Causes Aniridia
Shipra Bhatia et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Discovery and Characterization of Super-Enhancer-Associated Dependencies in Diffuse Large B Cell Lymphoma
Bjoern Chapuy et al.
CANCER CELL (2013)
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
Lei S. Qi et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
Jennifer E. Phillips-Cremins et al.
CELL (2013)
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
Luke A. Gilbert et al.
CELL (2013)
Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization
Matthew Denholtz et al.
CELL STEM CELL (2013)
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
Pouya Kheradpour et al.
GENOME RESEARCH (2013)
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Vlad C. Seitan et al.
GENOME RESEARCH (2013)
BLUEPRINT: mapping human blood cell epigenomes
Joost H. A. Martens et al.
HAEMATOLOGICA (2013)
eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci
Kambiz Mousavi et al.
MOLECULAR CELL (2013)
Effect of natural genetic variation on enhancer selection and function
S. Heinz et al.
NATURE (2013)
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
Wenbo Li et al.
NATURE (2013)
Topology of mammalian developmental enhancers and their regulatory landscapes
Wouter de Laat et al.
NATURE (2013)
The bromodomain protein Brd4 insulates chromatin from DNA damage signalling
Scott R. Floyd et al.
NATURE (2013)
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
Michael T. Y. Lam et al.
NATURE (2013)
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
Fan Lai et al.
NATURE (2013)
A high-resolution map of the three-dimensional chromatin interactome in human cells
Fulai Jin et al.
NATURE (2013)
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model
Robin P. Smith et al.
NATURE GENETICS (2013)
Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos
Stephen S. Gisselbrecht et al.
NATURE METHODS (2013)
Transcriptional regulation by Polycomb group proteins
Luciano Di Croce et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters
Michael Y. Tolstorukov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Identification of Genetic Variants That Affect Histone Modifications in Human Cells
Graham McVicker et al.
SCIENCE (2013)
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
Cosmas D. Arnold et al.
SCIENCE (2013)
Organization of the Mitotic Chromosome
Natalia Naumova et al.
SCIENCE (2013)
An Enhancer Element Harboring Variants Associated with Systemic Lupus Erythematosus Engages the TNFAIP3 Promoter to Influence A20 Expression
Shaofeng Wang et al.
PLOS GENETICS (2013)
Shadow enhancers: Frequently asked questions about distributed cis-regulatory information and enhancer redundancy
Scott Barolo
BIOESSAYS (2012)
A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History
Guillaume Junion et al.
CELL (2012)
Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
Wulan Deng et al.
CELL (2012)
Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
Guoliang Li et al.
CELL (2012)
Oct4 links multiple epigenetic pathways to the pluripotency network
Junjun Ding et al.
CELL RESEARCH (2012)
A view of nuclear Polycomb bodies
Vincenzo Pirrotta et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)
Anterior-posterior differences in HoxD chromatin topology in limb development
Iain Williamson et al.
DEVELOPMENT (2012)
Opposing Functions of the ETS Factor Family Define Shh Spatial Expression in Limb Buds and Underlie Polydactyly
Laura A. Lettice et al.
DEVELOPMENTAL CELL (2012)
Sonic hedgehog acts cell-autonomously on muscle precursor cells to generate limb muscle diversity
Claire Anderson et al.
GENES & DEVELOPMENT (2012)
Regulatory variation in a TBX5 enhancer leads to isolated congenital heart disease
Scott Smemo et al.
HUMAN MOLECULAR GENETICS (2012)
Bromodomain Protein Brd4 Associated with Acetylated Chromatin Is Important for Maintenance of Higher-order Chromatin Structure
Ranran Wang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Intragenic Enhancers Act as Alternative Promoters
Monika S. Kowalczyk et al.
MOLECULAR CELL (2012)
A functional selection model explains evolutionary robustness despite plasticity in regulatory networks
Naomi Habib et al.
MOLECULAR SYSTEMS BIOLOGY (2012)
DNase I sensitivity QTLs are a major determinant of human expression variation
Jacob F. Degner et al.
NATURE (2012)
The long-range interaction landscape of gene promoters
Amartya Sanyal et al.
NATURE (2012)
A map of the cis-regulatory sequences in the mouse genome
Yin Shen et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Massively parallel functional dissection of mammalian enhancers in vivo
Rupali P. Patwardhan et al.
NATURE BIOTECHNOLOGY (2012)
Large-scale discovery of enhancers from human heart tissue
Dalit May et al.
NATURE GENETICS (2012)
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
Stefan Bonn et al.
NATURE GENETICS (2012)
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Maxim Imakaev et al.
NATURE METHODS (2012)
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
Michael M. Hoffman et al.
NATURE METHODS (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Transcription factors: from enhancer binding to developmental control
Francois Spitz et al.
NATURE REVIEWS GENETICS (2012)
Complexity of chromatin folding is captured by the strings and binders switch model
Mariano Barbieri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice
Ya Guo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Matthew T. Maurano et al.
SCIENCE (2012)
Analysis of variation at transcription factor binding sites in Drosophila and humans
Mikhail Spivakov et al.
GENOME BIOLOGY (2012)
Two Forms of Loops Generate the Chromatin Conformation of the Immunoglobulin Heavy-Chain Gene Locus
Changying Guo et al.
CELL (2011)
Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila
Frederic Bantignies et al.
CELL (2011)
A Regulatory Archipelago Controls Hox Genes Transcription in Digits
Thomas Montavon et al.
CELL (2011)
BET Bromodomain Inhibition as a Therapeutic Strategy to Target c-Myc
Jake E. Delmore et al.
CELL (2011)
Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation
Qihuang Jin et al.
EMBO JOURNAL (2011)
H3K4 tri-methylation provides an epigenetic signature of active enhancers
Aleksandra Pekowska et al.
EMBO JOURNAL (2011)
Pioneer transcription factors: establishing competence for gene expression
Kenneth S. Zaret et al.
GENES & DEVELOPMENT (2011)
Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1
Gangqing Hu et al.
GENOME RESEARCH (2011)
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
Gabriel E. Zentner et al.
GENOME RESEARCH (2011)
The Histone Chaperone FACT: Structural Insights and Mechanisms for Nucleosome Reorganization
Duane D. Winkler et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
A unique chromatin signature uncovers early developmental enhancers in humans
Alvaro Rada-Iglesias et al.
NATURE (2011)
Mapping and analysis of chromatin state dynamics in nine human cell types
Jason Ernst et al.
NATURE (2011)
Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus
Indra Adrianto et al.
NATURE GENETICS (2011)
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes
Erik Engelen et al.
NATURE GENETICS (2011)
Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo
Michael W. Perry et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Dynamic Architecture of Hox Gene Clusters
Daan Noordermeer et al.
SCIENCE (2011)
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
Melissa M. Harrison et al.
PLOS GENETICS (2011)
An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells
Debbie L. C. van den Berg et al.
CELL STEM CELL (2010)
An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease
Mercedes Pardo et al.
CELL STEM CELL (2010)
Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila
Matthew J. Borok et al.
DEVELOPMENT (2010)
A CTCF-independent role for cohesin in tissue-specific transcription
Dominic Schmidt et al.
GENOME RESEARCH (2010)
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
Valer Gotea et al.
GENOME RESEARCH (2010)
A Specific Mutation in the Distant Sonic Hedgehog (SHH) Cis-Regulator (ZRS) Causes Werner Mesomelic Syndrome (WMS) While Complete ZRS Duplications Underlie Haas Type Polysyndactyly and Preaxial Polydactyly (PPD) With or Without Triphalangeal Thumb
Dagmar Wieczorek et al.
HUMAN MUTATION (2010)
A Model for all Genomes: The Role of Transcription Factories
Peter R. Cook
JOURNAL OF MOLECULAR BIOLOGY (2010)
Dynamic CRM occupancy reflects a temporal map of developmental progression
Bartek Wilczynski et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
Mediator and cohesin connect gene expression and chromatin architecture
Michael H. Kagey et al.
NATURE (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
Stefan Schoenfelder et al.
NATURE GENETICS (2010)
ChIP-Seq identification of weakly conserved heart enhancers
Matthew J. Blow et al.
NATURE GENETICS (2010)
Histone H3K27ac separates active from poised enhancers and predicts developmental state
Menno P. Creyghton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
Dominic Schmidt et al.
SCIENCE (2010)
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Sushmita Roy et al.
SCIENCE (2010)
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Mark B. Gerstein et al.
SCIENCE (2010)
Transcription factor binding variation in the evolution of gene regulation
Robin D. Dowell
TRENDS IN GENETICS (2010)
Chromatin Higher-order Structure and Dynamics
Christopher L. Woodcock et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)
A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers
Francesca De Santa et al.
PLOS BIOLOGY (2010)
Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription
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