4.7 Review

Molecular design in drug discovery: a comprehensive review of deep generative models

Journal

BRIEFINGS IN BIOINFORMATICS
Volume 22, Issue 6, Pages -

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bib/bbab344

Keywords

deep generative model; deep learning; de novo drug design; molecular design

Funding

  1. National Natural Science Foundation of China [61972138]
  2. Fundamental Research Funds for the Central Universities [531118010355, 531118010626]
  3. Hunan Provincial Natural Science Foundation of China [2020JJ4215]
  4. Key Research andDevelopment Program of Changsha [kq2004016]

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Deep generative models have gained popularity in the field of deep learning, particularly in drug discovery, showing superior performance. Researchers categorize these models into two types, analyzing their advantages and disadvantages. Although de novo molecular design automation shows promise, there are challenges to be overcome.
Deep generative models have been an upsurge in the deep learning community since they were proposed. These models are designed for generating new synthetic data including images, videos and texts by fitting the data approximate distributions. In the last few years, deep generative models have shown superior performance in drug discovery especially de novo molecular design. In this study, deep generative models are reviewed to witness the recent advances of de novo molecular design for drug discovery. In addition, we divide those models into two categories based on molecular representations in silico. Then these two classical types of models are reported in detail and discussed about both pros and cons. We also indicate the current challenges in deep generative models for de novo molecular design. De novo molecular design automatically is promising but a long road to be explored.

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