4.7 Review

Using machine learning approaches for multi-omics data analysis: A review

Journal

BIOTECHNOLOGY ADVANCES
Volume 49, Issue -, Pages -

Publisher

PERGAMON-ELSEVIER SCIENCE LTD
DOI: 10.1016/j.biotechadv.2021.107739

Keywords

Multi-omics; Machine Learning; Predictive Modelling; Supervised Learning; Unsupervised Learning; Systems Biology

Funding

  1. European Union [633983]
  2. National Institute for Health Research (NIHR) global health research unit on global diabetes outcomes research at the University of Dundee (INSPIRED project) [16/136/102]

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With the advancement of high-throughput omics technologies, it is crucial for biomedical research to adopt integrative approaches to analyze diverse omics data using machine learning algorithms. This can lead to the discovery of novel biomarkers and improve disease prediction and precision medicine delivery.-Methods in machine learning have enabled researchers to gain a deeper insight into biological systems and provide recommendations for interdisciplinary professionals looking to incorporate machine learning skills in multi-omics studies.
With the development of modern high-throughput omic measurement platforms, it has become essential for biomedical studies to undertake an integrative (combined) approach to fully utilise these data to gain insights into biological systems. Data from various omics sources such as genetics, proteomics, and metabolomics can be integrated to unravel the intricate working of systems biology using machine learning-based predictive algorithms. Machine learning methods offer novel techniques to integrate and analyse the various omics data enabling the discovery of new biomarkers. These biomarkers have the potential to help in accurate disease prediction, patient stratification and delivery of precision medicine. This review paper explores different integrative machine learning methods which have been used to provide an in-depth understanding of biological systems during normal physiological functioning and in the presence of a disease. It provides insight and recommendations for interdisciplinary professionals who envisage employing machine learning skills in multi-omics studies.

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