4.5 Article

ComplexFinder: A software package for the analysis of native protein complex fractionation experiments

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations

Sneha Rath et al.

Summary: MitoCarta3.0 is a catalog of over 1000 genes encoding the mammalian mitochondrial proteome, with 1136 human genes after manual review. It includes annotations of sub-mitochondrial localization and hierarchical 'MitoPathways', serving as a valuable resource for mitochondrial biology and medicine.

NUCLEIC ACIDS RESEARCH (2021)

Review Biochemical Research Methods

Next-generation Interactomics: Considerations for the Use of Co-elution to Measure Protein Interaction Networks

Daniela Salas et al.

MOLECULAR & CELLULAR PROTEOMICS (2020)

Article Biochemical Research Methods

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

Dorte B. Bekker-Jensen et al.

MOLECULAR & CELLULAR PROTEOMICS (2020)

Article Biochemical Research Methods

SciPy 1.0: fundamental algorithms for scientific computing in Python

Pauli Virtanen et al.

NATURE METHODS (2020)

Article Biochemistry & Molecular Biology

A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS

Moritz Heusel et al.

CELL SYSTEMS (2020)

Article Multidisciplinary Sciences

A salvage pathway maintains highly functional respiratory complex I

Karolina Szczepanowsk et al.

NATURE COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain

Reza Pourhaghighi et al.

CELL SYSTEMS (2020)

Article Biochemistry & Molecular Biology

TMEM70 functions in the assembly of complexes I and V

Laura Sanchez-Caballero et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2020)

Review Multidisciplinary Sciences

Array programming with NumPy

Charles R. Harris et al.

NATURE (2020)

Article Biotechnology & Applied Microbiology

Dynamic rewiring of the human interactome by interferon signaling

Craig H. Kerr et al.

GENOME BIOLOGY (2020)

Article Biochemical Research Methods

A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition

Zachary McBride et al.

MOLECULAR & CELLULAR PROTEOMICS (2019)

Article Biochemical Research Methods

EPIC: software toolkit for elution profile-based inference of protein complexes

Lucas ZhongMing Hu et al.

NATURE METHODS (2019)

Article Biochemistry & Molecular Biology

Complex-centric proteome profiling by SEC-SWATH-MS

Moritz Heusel et al.

MOLECULAR SYSTEMS BIOLOGY (2019)

Article Biochemistry & Molecular Biology

CORUM: the comprehensive resource of mammalian protein complexes2019

Madalina Giurgiu et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

Birgit H. M. Meldal et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biochemistry & Molecular Biology

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

Christina Ludwig et al.

MOLECULAR SYSTEMS BIOLOGY (2018)

Article Multidisciplinary Sciences

Instant Clue: A Software Suite for Interactive Data Visualization and Analysis

Hendrik Nolte et al.

SCIENTIFIC REPORTS (2018)

Article Biotechnology & Applied Microbiology

Context-specific interactions in literature-curated protein interaction databases

R. Greg Stacey et al.

BMC GENOMICS (2018)

Article Biochemical Research Methods

A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)

R. Greg Stacey et al.

BMC BIOINFORMATICS (2017)

Article Cell Biology

The Assembly Pathway of Mitochondrial Respiratory Chain Complex I

Sergio Guerrero-Castillo et al.

CELL METABOLISM (2017)

Article Biochemical Research Methods

Cryo-slicing Blue Native-Mass Spectrometry (csBN-MS), a Novel Technology for High Resolution Complexome Profiling

Catrin S. Mueller et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Biochemistry & Molecular Biology

The m-AAA Protease Associated with Neurodegeneration Limits MCU Activity in Mitochondria

Tim Koenig et al.

MOLECULAR CELL (2016)

Article Biochemical Research Methods

NOVA: a software to analyze complexome profiling data

Heiko Giese et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

A high-throughput approach for measuring temporal changes in the interactome

Anders R. Kristensen et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

LC-MS/MS as an alternative for SDS-PAGE in blue native analysis of protein complexes

Hans J. C. T. Wessels et al.

PROTEOMICS (2009)

Article Biochemical Research Methods

Blue native PAGE

Ilka Wittig et al.

NATURE PROTOCOLS (2006)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)