Related references
Note: Only part of the references are listed.Physiological function of FKBP12, a primary target of rapamycin/FK506: a newly identified role in transcription of ribosomal protein genes in yeast
Koji Kasahara
CURRENT GENETICS (2021)
Subcellular localization of the J-protein Sis1 regulates the heat shock response
Zoe A. Feder et al.
JOURNAL OF CELL BIOLOGY (2021)
Proteotoxic stress is a driver of the loser status and cell competition
Michael E. Baumgartner et al.
NATURE CELL BIOLOGY (2021)
Ribosomopathy-associated mutations cause proteotoxic stress that is alleviated by TOR inhibition
Carles Recasens-Alvarez et al.
NATURE CELL BIOLOGY (2021)
Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing
Simon Alberti et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2021)
Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator
Adrian L. Sanborn et al.
ELIFE (2021)
Dysregulated Ribosome Biogenesis Reveals Therapeutic Liabilities in Cancer
Sladana Bursac et al.
TRENDS IN CANCER (2021)
Ubiquitin release from eL40 is required for cytoplasmic maturation and function of 60S ribosomal subunits in Saccharomyces cerevisiae
Sara Martin-Villanueva et al.
FEBS JOURNAL (2020)
Chromatin Fiber Invasion and Nucleosome Displacement by the Rap1 Transcription Factor
Maxime Mivelaz et al.
MOLECULAR CELL (2020)
Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 inSaccharomyces cerevisiae
Koji Kasahara et al.
PLOS GENETICS (2020)
Mechanisms coordinating ribosomal protein gene transcription in response to stress
Sevil Zencir et al.
NUCLEIC ACIDS RESEARCH (2020)
Sis1 potentiates the stress response to protein aggregation and elevated temperature
Courtney L. Klaips et al.
NATURE COMMUNICATIONS (2020)
Genomic clustering within functionally related gene families in Ascomycota fungi
Danielle Hagee et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Sfp1 regulates transcriptional networks driving cell growth and division through multiple promoter-binding modes
Benjamin Albert et al.
GENES & DEVELOPMENT (2019)
Functionally Related Genes Cluster into Genomic Regions That Coordinate Transcription at a Distance in Saccharomyces cerevisiae
Alanna Cera et al.
MSPHERE (2019)
Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness
Blake W. Tye et al.
ELIFE (2019)
A ribosome assembly stress response regulates transcription to maintain proteome homeostasis
Benjamin Albert et al.
ELIFE (2019)
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
Yang Eric Guo et al.
NATURE (2019)
The Ubiquitin Moiety of Ubi1 Is Required for Productive Expression of Ribosomal Protein eL40 in Saccharomyces cerevisiae
Sara Martin-Villanueva et al.
CELLS (2019)
RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast
Sandipan Brahma et al.
MOLECULAR CELL (2019)
The heat-shock, or HSF1-mediated proteotoxic stress, response in cancer: from proteomic stability to oncogenesis
Chengkai Dai
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
Matthew J. Rossi et al.
GENOME RESEARCH (2018)
Systematic Identification, Characterization, and Conservation of Adjacent-Gene Coregulation in the Budding Yeast Saccharomyces cerevisiae
Reem S. Eldabagh et al.
MSPHERE (2018)
Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes
Maria Jessica Bruzzone et al.
GENES & DEVELOPMENT (2018)
Hold on to your friends: Dedicated chaperones of ribosomal proteins
Benjamin Pillet et al.
BIOESSAYS (2017)
Identification of a transcriptional activation domain in yeast repressor activator protein 1 (Rap1) using an altered DNA-binding specificity variant
Amanda N. Johnson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2017)
A Reply to MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers,'' by Chereji et al.
Slawomir Kubik et al.
MOLECULAR CELL (2017)
MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers
Razvan V. Chereji et al.
MOLECULAR CELL (2017)
Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast
Maria Cristina Bosio et al.
NUCLEIC ACIDS RESEARCH (2017)
The replicative lifespan-extending deletion of SGF73 results in altered ribosomal gene expression in yeast
Amanda G. Mason et al.
AGING CELL (2017)
Role of CK2-dependent phosphorylation of Ifh1 and Crf1 in transcriptional regulation of ribosomal protein genes in Saccharomyces cerevisiae
Myung Sup Kim et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
A Molecular Titration System Coordinates Ribosomal Protein Gene Transcription with Ribosomal RNA Synthesis
Benjamin Albert et al.
MOLECULAR CELL (2016)
Promoter architecture and transcriptional regulation of Abf1-dependent ribosomal protein genes in Saccharomyces cerevisiae
Beatrice Fermi et al.
NUCLEIC ACIDS RESEARCH (2016)
Enhancer Sharing Promotes Neighborhoods of Transcriptional Regulation Across Eukaryotes
Porfirio Quintero-Cadena et al.
G3-GENES GENOMES GENETICS (2016)
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
Min-Kyung Sung et al.
ELIFE (2016)
Compartment-specific aggregases direct distinct nuclear and cytoplasmic aggregate deposition
Stephanie B. M. Miller et al.
EMBO JOURNAL (2015)
Molecular mechanisms of ribosomal protein gene coregulation
Rohit Reja et al.
GENES & DEVELOPMENT (2015)
Spatially Organized Aggregation of Misfolded Proteins as Cellular Stress Defense Strategy
Stephanie B. M. Miller et al.
JOURNAL OF MOLECULAR BIOLOGY (2015)
Global Promoter Targeting of a Conserved Lysine Deacetylase for Transcriptional Shutoff during Quiescence Entry
Jeffrey N. McKnight et al.
MOLECULAR CELL (2015)
Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast
Slawomir Kubik et al.
MOLECULAR CELL (2015)
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E. Zentner et al.
NATURE COMMUNICATIONS (2015)
A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome
Zhenling Peng et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2014)
Dissecting the cis and trans Elements That Regulate Adjacent-Gene Coregulation in Saccharomyces cerevisiae
James T. Arnone et al.
EUKARYOTIC CELL (2014)
Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription
Britta Knight et al.
GENES & DEVELOPMENT (2014)
Gcn5 and Sirtuins Regulate Acetylation of the Ribosomal Protein Transcription Factor Ifh1
Michael Downey et al.
CURRENT BIOLOGY (2013)
Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae
John L. Woolford et al.
GENETICS (2013)
The Evolutionary Rewiring of the Ribosomal Protein Transcription Pathway Modifies the Interaction of Transcription Factor Heteromer Ifh1-Fhl1 (Interacts with Forkhead 1-Forkhead-like 1) with the DNA-binding Specificity Element
Jaideep Mallick et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Tight Coordination of Protein Translation and HSF1 Activation Supports the Anabolic Malignant State
Sandro Santagata et al.
SCIENCE (2013)
Integration of Multiple Nutrient Cues and Regulation of Lifespan by Ribosomal Transcription Factor Ifh1
Ling Cai et al.
CELL REPORTS (2013)
HSF1 Drives a Transcriptional Program Distinct from Heat Shock to Support Highly Malignant Human Cancers
Marc L. Mendillo et al.
CELL (2012)
Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L
Alexandre Huber et al.
EMBO JOURNAL (2011)
Development of high-throughput phosphorylation profiling method for identification of Ser/Thr kinase specificity
Eun-Mi Kim et al.
JOURNAL OF PEPTIDE SCIENCE (2011)
Hmo1 directs pre-initiation complex assembly to an appropriate site on its target gene promoters by masking a nucleosome-free region
Koji Kasahara et al.
NUCLEIC ACIDS RESEARCH (2011)
Identification and characterization of the activation domain of Iffh1, an activator of model TATA-less genes
Peipei Zhong et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)
Stb3 Plays a Role in the Glucose-Induced Transition from Quiescence to Growth in Saccharomyces cerevisiae
Dritan Liko et al.
GENETICS (2010)
Growth control and ribosome biogenesis
Harri Lempiaeinen et al.
CURRENT OPINION IN CELL BIOLOGY (2009)
A Rab escort protein integrates the secretion system with TOR signaling and ribosome biogenesis
Jaspal Singh et al.
GENES & DEVELOPMENT (2009)
High-resolution DNA-binding specificity analysis of yeast transcription factors
Cong Zhu et al.
GENOME RESEARCH (2009)
Sfp1 Interaction with TORC1 and Mrs6 Reveals Feedback Regulation on TOR Signaling
Hard Lempiaeinen et al.
MOLECULAR CELL (2009)
Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6
Soyeon I. Lippman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The anchor-away technique: Rapid, conditional establishment of yeast mutant phenotypes
Hirohito Haruki et al.
MOLECULAR CELL (2008)
A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters
Gwenael Badis et al.
MOLECULAR CELL (2008)
Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II
Koji Kasahara et al.
NUCLEIC ACIDS RESEARCH (2008)
Hmo1 is required for TOR-Dependent regulation of ribosomal protein gene transcription
Axel B. Berger et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae
Koji Kasahara et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae
Dritan Liko et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Potential interface between ribosomal protein production and pre-rRNA processing
Dipayan Rudra et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction
Krassimira A. Garbett et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components
Arnaud Laferte et al.
GENES & DEVELOPMENT (2006)
An HMG protein, Hmo1, associates with promoters of many ribosomal protein genes and throughout the rRNA gene locus in Saccharomyces cerevisiae
DB Hall et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes
CH Wade et al.
YEAST (2006)
Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins
D Rudra et al.
EMBO JOURNAL (2005)
TOR regulates ribosomal protein gene expression via PKA and the forkhead transcription factor FHL1
DE Martin et al.
CELL (2004)
Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1
SB Schawalder et al.
NATURE (2004)
The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes
JT Wade et al.
NATURE (2004)
How cells coordinate growth and division
P Jorgensen et al.
CURRENT BIOLOGY (2004)
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size
P Jorgensen et al.
GENES & DEVELOPMENT (2004)
Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression
RM Marion et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee et al.
SCIENCE (2002)
Systematic identification of pathways that couple cell growth and division in yeast
P Jorgensen et al.
SCIENCE (2002)
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
JD Lieb et al.
NATURE GENETICS (2001)
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
BA Cohen et al.
NATURE GENETICS (2000)
Different roles for Abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene
RF Lascaris et al.
NUCLEIC ACIDS RESEARCH (2000)
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
JD Hughes et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)