Related references
Note: Only part of the references are listed.Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus
Hans Kristian Mattila et al.
BIOTECHNOLOGY FOR BIOFUELS (2020)
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
Shingo Miyauchi et al.
DNA RESEARCH (2020)
Polyporales Brown Rot Species Fomitopsis pinicola: Enzyme Activity Profiles, Oxalic Acid Production, and Fe3+-Reducing Metabolite Secretion
Firoz Shah et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses
Johanna Rytioja et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown
Shingo Miyauchi et al.
PLOS ONE (2017)
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities
Laszlo G. Nagy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation
Oleksandr Skyba et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion
Jill Gaskell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
Daniel J. Klionsky et al.
AUTOPHAGY (2016)
Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta
Jiwei Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
Marie Couturier et al.
BIOTECHNOLOGY FOR BIOFUELS (2015)
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
Dimitrios Floudas et al.
FUNGAL GENETICS AND BIOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
Steffen Priebe et al.
BIOINFORMATICS (2015)
Influence of Populus Genotype on Gene Expression by the Wood Decay Fungus Phanerochaete chrysosporium
Jill Gaskell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations
J. Philipp Benz et al.
MOLECULAR MICROBIOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Robert Riley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
Chiaki Hori et al.
PLOS GENETICS (2014)
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
Anthony Levasseur et al.
BIOTECHNOLOGY FOR BIOFUELS (2013)
Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation
Igor A. Yakovlev et al.
FUNGAL GENETICS AND BIOLOGY (2013)
Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp and Phlebia brevispora
Khajamohiddin Syed et al.
MYCOLOGIA (2013)
Time-Dependent Profiles of Transcripts Encoding Lignocellulose-Modifying Enzymes of the White Rot Fungus Phanerochaete carnosa Grown on Multiple Wood Substrates
Jacqueline MacDonald et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
A Novel Glycosylphosphatidylinositol-Anchored Glycoside Hydrolase from Ustilago esculenta Functions in β-1,3-Glucan Degradation
Masahiro Nakajima et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose
Igor Yakovlev et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2012)
Peculiarities of brown-rot fungi and biochemical Fenton reaction with regard to their potential as a model for bioprocessing biomass
Valdeir Arantes et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2012)
Molecular identification and functional characterization of cytochrome P450 monooxygenases from the brown-rot basidiomycete Postia placenta
Masamichi Ide et al.
ARCHIVES OF MICROBIOLOGY (2012)
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
Hitoshi Suzuki et al.
BMC GENOMICS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Elena Fernandez-Fueyo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Dimitrios Floudas et al.
SCIENCE (2012)
Transcriptomic Responses of the Softwood-Degrading White-Rot Fungus Phanerochaete carnosa during Growth on Coniferous and Deciduous Wood
Jacqueline MacDonald et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species
Amber Vanden Wymelenberg et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Proteomic and Functional Analysis of the Cellulase System Expressed by Postia placenta during Brown Rot of Solid Wood
Jae San Ryu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta
Daniel J. Yelle et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
SignalP 4.0: discriminating signal peptides from transmembrane regions
Thomas Nordahl Petersen et al.
NATURE METHODS (2011)
Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium
Amber Vanden Wymelenberg et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Laccase and Its Role in Production of Extracellular Reactive Oxygen Species during Wood Decay by the Brown Rot Basidiomycete Postia placenta
Dongsheng Wei et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Proteomic characterization of lignocellulose-degrading enzymes secreted by Phanerochaete carnosa grown on spruce and microcrystalline cellulose
Sonam Mahajan et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review
Taina K. Lundell et al.
JOURNAL OF BASIC MICROBIOLOGY (2010)
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Diego Martinez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood
Holy Ravalason et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2008)
Role of fungal peroxidases in biological ligninolysis
Kenneth E. Hammel et al.
CURRENT OPINION IN PLANT BIOLOGY (2008)
Evidence for cleavage of lignin by a brown rot basidiomycete
Daniel J. Yelle et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
Influence of fungal decay by different basidiomycetes on the structural integrity of Norway spruce wood
C. Brischke et al.
HOLZ ALS ROH-UND WERKSTOFF (2008)
Degradation of cellulose by basidiomycetous fungi
Petr Baldrian et al.
FEMS MICROBIOLOGY REVIEWS (2008)
New insights into the ligninolytic capability of a wood decay ascomycete
Semarjit Shary et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Characteristics of Gloeophyllum trabeum alcohol oxidase, an extracellular source of H2O2 in brown rot decay of wood
Geoffrey Daniel et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates
Shin Sato et al.
MICROBIOLOGY-SGM (2007)
Structural evidence for the evolution of xyloglucanase activity from xyloglucan endo-transglycosylases:: Biological implications for cell wall metabolism
Martin J. Baumann et al.
PLANT CELL (2007)
Characterization of a hydroxyl-radical-producing glycoprotein and its presumptive genes from the white-rot basidiomycete Phanerochaete chrysosporium
Hiromi Tanaka et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium
Phil Kersten et al.
FUNGAL GENETICS AND BIOLOGY (2007)
Fungal hydroquinones contribute to brown rot of wood
Melissa R. Suzuki et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins
Amber Vanden Wymelenberg et al.
FUNGAL GENETICS AND BIOLOGY (2006)
Microarray-based global differential expression profiling of P450 monooxygenases and regulatory proteins for signal transduction pathways in the white rot fungus Phanerochaete chrysosporium
H Doddapaneni et al.
MOLECULAR GENETICS AND GENOMICS (2005)
The Phanerochaete chrysosporium secretome:: Database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium
A Vanden Wymelenberg et al.
JOURNAL OF BIOTECHNOLOGY (2005)
Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium:: Evidence for gene duplications and extensive gene clustering -: art. no. 92
H Doddapaneni et al.
BMC GENOMICS (2005)
Relationship between production of hydroxyl radicals and degradation of wood, crystalline cellulose, and a lignin-related compound or accumulation of oxalic acid in cultures of brown-rot fungi
S Kaneko et al.
JOURNAL OF WOOD SCIENCE (2005)
Production of 2,5-dimethoxyhydroquinone by the brown-rot fungus Serpula lacrymans to drive extracellular Fenton reaction
T Shimokawa et al.
HOLZFORSCHUNG (2004)
Effect of pH and oxalate on hydroquinone-derived hydroxyl radical formation during brown rot wood degradation
E Varela et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Pathways for extracellular fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum
KA Jensen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes
DS Hibbett et al.
SYSTEMATIC BIOLOGY (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Immunogold labeling of an extracellular substance producing hydroxyl radicals in wood degraded by brown-rot fungus Tyromyces palustris
T Hirano et al.
JOURNAL OF WOOD SCIENCE (2000)