Related references
Note: Only part of the references are listed.Clinically relevant mutations in core metabolic genes confer antibiotic resistance
Allison J. Lopatkin et al.
SCIENCE (2021)
Population structure and genetic diversity of non-O157 Shiga toxin-producing Escherichia coli (STEC) clinical isolates from Michigan
Heather M. Blankenship et al.
SCIENTIFIC REPORTS (2021)
Genetic Diversity of Non-O157 Shiga Toxin-Producing Escherichia coli Recovered From Patients in Michigan and Connecticut
Heather M. Blankenship et al.
FRONTIERS IN MICROBIOLOGY (2020)
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Potential Effects of Horizontal Gene Exchange in the Human Gut
Aaron Lerner et al.
FRONTIERS IN IMMUNOLOGY (2017)
Resistance mechanisms and fitness of Salmonella Typhimurium and Salmonella Enteritidis mutants evolved under selection with ciprofloxacin in vitro
Chuan-Zhen Zhang et al.
SCIENTIFIC REPORTS (2017)
Challenges and opportunities for whole-genome sequencing- based surveillance of antibiotic resistance
Anita C. Schurch et al.
ANNALS OF THE NEW YORK ACADEMY OF SCIENCES (2017)
Antimicrobial Drug-Resistant Shiga Toxin-Producing Escherichia coli Infections, Michigan, USA
Sanjana Mukherjee et al.
EMERGING INFECTIOUS DISEASES (2017)
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
M. J. Ellington et al.
CLINICAL MICROBIOLOGY AND INFECTION (2017)
Increasing incidence of non-O157 Shiga toxin-producing Escherichia coli (STEC) in Michigan and association with clinical illness
M. Tseng et al.
EPIDEMIOLOGY AND INFECTION (2016)
Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella
Patrick F. McDermott et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)
Factors Associated with Shiga Toxin-Producing Escherichia coli Shedding by Dairy and Beef Cattle
Cristina Venegas-Vargas et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Shiga Toxin-Producing Escherichia coli Infection, Antibiotics, and Risk of Developing Hemolytic Uremic Syndrome: A Meta-analysis
Stephen B. Freedman et al.
CLINICAL INFECTIOUS DISEASES (2016)
Antimicrobial resistance profiles of Shiga toxin-producing Escherichia coli O157 and Non-O157 recovered from domestic farm animals in rural communities in Northwestern Mexico
Bianca A. Amezquita-Lopez et al.
ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2016)
WGS accurately predicts antimicrobial resistance in Escherichia coli
Gregory H. Tyson et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
What causes decreased erythromycin resistance in Streptococcus pyogenes? Dynamics of four clones in a southern European region from 2005 to 2012
Milagrosa Montes et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
Whole-genome sequencing to control antimicrobial resistance
Claudio U. Koeser et al.
TRENDS IN GENETICS (2014)
Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success
Liam S. Redgrave et al.
TRENDS IN MICROBIOLOGY (2014)
Antimicrobial Resistance and Virulence: a Successful or Deleterious Association in the Bacterial World?
Alejandro Beceiro et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
Increased Recognition of Non-O157 Shiga Toxin-Producing Escherichia coli Infections in the United States During 2000-2010: Epidemiologic Features and Comparison with E. coli O157 Infections
L. Hannah Gould et al.
FOODBORNE PATHOGENS AND DISEASE (2013)
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
N. Stoesser et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
Serogroups, virulence genes and antibiotic resistance in Shiga toxin-producing Escherichia coli isolated from diarrheic and non-diarrheic pediatric patients in Iran
Hassan Momtaz et al.
GUT PATHOGENS (2013)
Seasonality and Temporal Correlation between Community Antibiotic Use and Resistance in the United States
Lova Sun et al.
CLINICAL INFECTIOUS DISEASES (2012)
Extraintestinal pathogenic Escherichia coli: an update on antimicrobial resistance, laboratory diagnosis and treatment
Johann D. D. Pitout
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Transforming clinical microbiology with bacterial genome sequencing
Xavier Didelot et al.
NATURE REVIEWS GENETICS (2012)
Characteristics of NDM-1-Producing Escherichia coli Isolates That Belong to the Successful and Virulent Clone ST131
Gisele Peirano et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)
Antimicrobial and Antimotility Agent Use in Persons with Shiga Toxin-Producing Escherichia coli O157 Infection in FoodNet Sites
Jennifer M. Nelson et al.
CLINICAL INFECTIOUS DISEASES (2011)
Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study
Martina Bielaszewska et al.
LANCET INFECTIOUS DISEASES (2011)
Antimicrobial Susceptibility Testing: A Review of General Principles and Contemporary Practices
James H. Jorgensen et al.
CLINICAL INFECTIOUS DISEASES (2009)
Plasmid-Mediated Quinolone Resistance: a Multifaceted Threat
Jacob Strahilevitz et al.
CLINICAL MICROBIOLOGY REVIEWS (2009)
CTX-M β-Lactamase Production and Virulence of Escherichia coli K1
Damien Dubois et al.
EMERGING INFECTIOUS DISEASES (2009)
Super-shedding and the link between human infection and livestock carriage of Escherichia coli O157
Margo Chase-Topping et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Variation in virulence among clades of Escherichia coli O3157:H7, associated with disease outbreaks
Shannon D. Manning et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Surveillance for Shiga toxin-producing Escherichia coli, Michigan, 2001-2005
Shannon D. Manning et al.
EMERGING INFECTIOUS DISEASES (2007)
Non-O157 shiga toxin-producing Escherichia coli infections in the United States, 1983-2002
JT Brooks et al.
JOURNAL OF INFECTIOUS DISEASES (2005)
Antimicrobial resistance of Shiga toxin (verotoxin)-producing Escherichia coli O157:H7 and non-O157 strains isolated from humans, cattle, sheep and food in Spain
A Mora et al.
RESEARCH IN MICROBIOLOGY (2005)
Mechanisms of resistance to quinolones
GA Jacoby
CLINICAL INFECTIOUS DISEASES (2005)
Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome
PI Tarr et al.
LANCET (2005)
Antimicrobial resistance of Escherichia coli O26, O103, O111, O128, and O145 from animals and humans
CM Schroeder et al.
EMERGING INFECTIOUS DISEASES (2002)