High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers

Chrats Melkonian and colleagues use metagenomics and transcriptomics to study microbial dynamics in a 15-year old bioreactor. In contrast to what is expected in a system where benzene is the primary carbon and energy source, relatively few members of the microbial community can degrade this compound. The results have implications for understanding interdependencies within such a community. A key question in microbial ecology is what the driving forces behind the persistence of large biodiversity in natural environments are. We studied a microbial community with more than 100 different types of species which evolved in a 15-years old bioreactor with benzene as the main carbon and energy source and nitrate as the electron acceptor. Using genome-centric metagenomics plus metatranscriptomics, we demonstrate that most of the community members likely feed on metabolic left-overs or on necromass while only a few of them, from families Rhodocyclaceae and Peptococcaceae, are candidates to degrade benzene. We verify with an additional succession experiment using metabolomics and metabarcoding that these few community members are the actual drivers of benzene degradation. As such, we hypothesize that high species richness is maintained and the complexity of a natural community is stabilized in a controlled environment by the interdependencies between the few benzene degraders and the rest of the community members, ultimately resulting in a food web with different trophic levels.

Automated summary

Researchers used metagenomics and transcriptomics to study microbial dynamics in a 15-year old bioreactor with benzene as the main carbon source. Their findings revealed that most members of the microbial community likely feed on metabolic leftovers or necromass, while only a few are capable of degrading benzene. These benzene degraders are essential for maintaining species richness and ecosystem stability within the community.