Related references
Note: Only part of the references are listed.Adintoviruses: a proposed animal-tropic family of midsize eukaryotic linear dsDNA (MELD) viruses
Gabriel J. Starrett et al.
VIRUS EVOLUTION (2021)
Adintoviruses: a proposed animal-tropic family of midsize eukaryotic linear dsDNA (MELD) viruses
Gabriel J. Starrett et al.
VIRUS EVOLUTION (2021)
Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History
Quentin D. Sprengelmeyer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
ICTV Virus Taxonomy Profile: Nudiviridae
Robert L. Harrison et al.
JOURNAL OF GENERAL VIROLOGY (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Complete genome sequence of Oryctes rhinoceros nudivirus isolated from the coconut rhinoceros beetle in Solomon Islands
Kayvan Etebari et al.
VIRUS RESEARCH (2020)
Common structuring principles of the Drosophila melanogaster microbiome on a continental scale and between host and substrate
Yun Wang et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2020)
Nudivirus Remnants in the Genomes of Arthropods
Ruo-Lin Cheng et al.
GENOME BIOLOGY AND EVOLUTION (2020)
Gene expression networks in the Drosophila Genetic Reference Panel
Logan J. Everett et al.
GENOME RESEARCH (2020)
Seasonality of Respiratory Viral Infections
Miyu Moriyama et al.
ANNUAL REVIEW OF VIROLOGY, VOL 7, 2020 (2020)
Reorganizing the familyParvoviridae: a revised taxonomy independent of the canonical approach based on host association
Judit J. Penzes et al.
ARCHIVES OF VIROLOGY (2020)
Partitiviruses infecting Drosophila melanogaster and Aedes aegypti exhibit efficient biparental vertical transmission
Shaun T. Cross et al.
JOURNAL OF VIROLOGY (2020)
Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
Martin Kapun et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Genomic analysis reveals an exogenous viral symbiont with dual functionality in parasitoid wasps and their hosts
Kelsey A. Coffman et al.
PLOS PATHOGENS (2020)
Recurrent evolution of high virulence in isolated populations of a DNA virus
Tom Hill et al.
ELIFE (2020)
Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses
Vincent Loiseau et al.
VIRUS EVOLUTION (2020)
A new lineage of segmented RNA viruses infecting animals
Darren J. Obbard et al.
VIRUS EVOLUTION (2020)
Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel
Lin Kang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Characterization of the RNA Transcription Profile of Bombyx mori Bidensovirus
Rui Li et al.
VIRUSES-BASEL (2019)
An insight into the sialome, mialome and virome of the horn fly, Haematobia irritans
J. M. Ribeiro et al.
BMC GENOMICS (2019)
Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania
Megan A. Sloan et al.
PLOS GENETICS (2019)
Control of RNA viruses in mosquito cells through the acquisition of vDNA and endogenous viral elements
Michel Tassetto et al.
ELIFE (2019)
Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome
Ching-Ho Chang et al.
GENETICS (2019)
Pervasive Linked Selection and Intermediate-Frequency Alleles Are Implicated in an Evolve-and-Resequencing Experiment of Drosophila simulans
John K. Kelly et al.
GENETICS (2019)
A Large Panel of Drosophila simulans Reveals an Abundance of Common Variants
Sarah A. Signor et al.
GENOME BIOLOGY AND EVOLUTION (2018)
How gut transcriptional function of Drosophila melanogaster varies with the presence and composition of the gut microbiota
Alyssa Bost et al.
MOLECULAR ECOLOGY (2018)
Using Metagenomics to Characterize an Expanding Virosphere
Yong-Zhen Zhang et al.
CELL (2018)
Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects
Enzo Z. Poirier et al.
CELL HOST & MICROBE (2018)
The dynamic evolution of Drosophila innubila Nudivirus
Tom Hill et al.
INFECTION GENETICS AND EVOLUTION (2018)
Complexities of Viral Mutation Rates
Kayla M. Peck et al.
JOURNAL OF VIROLOGY (2018)
Pleiotropic effects of regulatory variation in tan result in correlation of two pigmentation traits in Drosophila melanogaster
Lukas Endler et al.
MOLECULAR ECOLOGY (2018)
Meta-transcriptomics and the evolutionary biology of RNA viruses
Mang Shi et al.
VIRUS RESEARCH (2018)
A Genomic Reference Panel for Drosophila serrata
Adam J. Reddiex et al.
G3-GENES GENOMES GENETICS (2018)
A Survey of Virus Recombination Uncovers Canonical Features of Artificial Chimeras Generated During Deep Sequencing Library Preparation
Jean Peccoud et al.
G3-GENES GENOMES GENETICS (2018)
Isolation of a natural DNA virus of Drosophila melanogaster, and characterisation of host resistance and immune responses
William H. Palmer et al.
PLOS PATHOGENS (2018)
p38b and JAK-STAT signaling protect against Invertebrate iridescent virus 6 infection in Drosophila
Cara West et al.
PLOS PATHOGENS (2018)
No detectable effect of Wolbachia wMel on the prevalence and abundance of the RNA virome of Drosophila melanogaster
Mang Shi et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
Lidia Mateo et al.
SCIENTIFIC REPORTS (2018)
Expansion of the metazoan virosphere: progress, pitfalls, and prospects
Darren J. Obbard
CURRENT OPINION IN VIROLOGY (2018)
Why are RNA virus mutation rates so damn high?
Siobain Duffy
PLOS BIOLOGY (2018)
Robust manipulation of the behavior of Drosophila melanogaster by a fungal pathogen in the laboratory
Carolyn Elya et al.
ELIFE (2018)
Immune priming and clearance of orally acquired RNA viruses in Drosophila
Juan A. Mondotte et al.
NATURE MICROBIOLOGY (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
The virome of Drosophila suzukii, an invasive pest of soft fruit
Nathan C. Medd et al.
VIRUS EVOLUTION (2018)
Genetic and Genomic Response to Selection for Food Consumption in Drosophila melanogaster
Megan E. Garlapow et al.
BEHAVIOR GENETICS (2017)
Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance
Mads F. Schou et al.
MOLECULAR ECOLOGY (2017)
Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates
Arielle L. Yablonovitch et al.
NATURE COMMUNICATIONS (2017)
Viruses as vectors of horizontal transfer of genetic material in eukaryotes
Clement Gilbert et al.
CURRENT OPINION IN VIROLOGY (2017)
Hytrosaviruses: current status and perspective
Henry M. Kariithi et al.
CURRENT OPINION IN INSECT SCIENCE (2017)
Comparative genomics shows that viral integrations are abundant and express piRNAs in the arboviral vectors Aedes aegypti and Aedes albopictus
Umberto Palatini et al.
BMC GENOMICS (2017)
Innate and intrinsic antiviral immunity in Drosophila
Assel Mussabekova et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2017)
HYBRIDSPADES: an algorithm for hybrid assembly of short and long reads
Dmitry Antipov et al.
BIOINFORMATICS (2016)
Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster
Yanzhu Lin et al.
BMC GENOMICS (2016)
A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus
Justin B. Lack et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Continuous Influx of Genetic Material from Host to Virus Populations
Clement Gilbert et al.
PLOS GENETICS (2016)
Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family
David Lepetit et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
Ryan R. Wick et al.
BIOINFORMATICS (2015)
A novel group of diverse Polinton-like viruses discovered by metagenome analysis
Natalya Yutin et al.
BMC BIOLOGY (2015)
Frequent Somatic Mutation in Adult Intestinal Stem Cells Drives Neoplasia and Genetic Mosaicism during Aging
Katarzyna Siudeja et al.
CELL STEM CELL (2015)
The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
Justin B. Lack et al.
GENETICS (2015)
Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south-eastern United States and Caribbean Islands
Joyce Y. Kao et al.
MOLECULAR ECOLOGY (2015)
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
Ge Tan et al.
SYSTEMATIC BIOLOGY (2015)
The Histone Demethylase KDM5 Activates Gene Expression by Recognizing Chromatin Context through Its PHD Reader Motif
Xingyin Liu et al.
CELL REPORTS (2015)
Global Diversity Lines-A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains
Jennifer K. Grenier et al.
G3-GENES GENOMES GENETICS (2015)
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster
Claire L. Webster et al.
PLOS BIOLOGY (2015)
The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
Justin B. Lack et al.
GENETICS (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
The evolution, diversity, and host associations of rhabdoviruses
Ben Longdon et al.
VIRUS EVOLUTION (2015)
Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, Armadillidium vulgare
Benoit Piegu et al.
JOURNAL OF GENERAL VIROLOGY (2014)
A dsRNA-binding protein of a complex invertebrate DNA virus suppresses the Drosophila RNAi response
Alfred W. Bronkhorst et al.
NUCLEIC ACIDS RESEARCH (2014)
Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses
Mart Krupovic et al.
SCIENTIFIC REPORTS (2014)
New Insights into the Evolution of Entomopoxvirinae from the Complete Genome Sequences of Four Entomopoxviruses Infecting Adoxophyes honmai, Choristoneura biennis, Choristoneura rosaceana, and Mythimna separata
Julien Theze et al.
JOURNAL OF VIROLOGY (2013)
Whole-genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection
D. Campo et al.
MOLECULAR ECOLOGY (2013)
Reversal of an ancient sex chromosome to an autosome in Drosophila
Beatriz Vicoso et al.
NATURE (2013)
Virology, Epidemiology and Pathology of Glossina Hytrosavirus, and Its Control Prospects in Laboratory Colonies of the Tsetse Fly, Glossina pallidipes (Diptera; Glossinidae)
Henry Kariithi et al.
Insects (2013)
Spatial and spatio-temporal models with R-INLA
Marta Blangiardo et al.
SPATIAL AND SPATIO-TEMPORAL EPIDEMIOLOGY (2013)
Coevolution between simple sequence repeats (SSRs) and virus genome size
Xiangyan Zhao et al.
BMC GENOMICS (2012)
Fly culture collapse disorder Detection, prophylaxis and eradication of the microsporidian parasite Tubulinosema ratisbonensis infecting Drosophila melanogaster
Sebastian Niehus et al.
FLY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
The Drosophila melanogaster Genetic Reference Panel
Trudy F. C. Mackay et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Estimating the prevalence of infections in vector populations using pools of samples
N. Speybroeck et al.
MEDICAL AND VETERINARY ENTOMOLOGY (2012)
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
Robert Kofler et al.
BIOINFORMATICS (2011)
PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
Robert Kofler et al.
PLOS ONE (2011)
Musca domestica Salivary Gland Hypertrophy Virus, a Globally Distributed Insect Virus That Infects and Sterilizes Female Houseflies
Pannipa Prompiboon et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs
Qingfa Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Endogenous Viral Elements in Animal Genomes
Aris Katzourakis et al.
PLOS GENETICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
GARD: a genetic algorithm for recombination detection
Sergei L. Kosakovsky Pond et al.
BIOINFORMATICS (2006)
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
B Shapiro et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Temperature dependent larval resource allocation shaping adult body size in Drosophila melanogaster
Z Bochdanovits et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2003)
Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome
C Upton et al.
JOURNAL OF VIROLOGY (2003)
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
A new densovirus isolated from the mosquito Culex pipiens (Diptera : Culicidae)
FX Jousset et al.
VIRUS RESEARCH (2000)
Share Paper
