4.7 Article

Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients

Related references

Note: Only part of the references are listed.
Article Allergy

Coronavirus disease 2019 in patients with inborn errors of immunity: An international study

Isabelle Meyts et al.

Summary: The study shows that patients with IEI exhibit varied responses to SARS-CoV-2 infection, with some requiring hospitalization and even intensive care, and a non-negligible mortality rate. In comparison to the general population, younger IEI patients may face a higher risk of severe illness and mortality.

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2021)

Editorial Material Public, Environmental & Occupational Health

ICU-acquired bloodstream infections in critically ill patients with COVID-19

S. Kokkoris et al.

JOURNAL OF HOSPITAL INFECTION (2021)

Letter Medicine, General & Internal

Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens

David Kim et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2020)

Article Anesthesiology

Intubation and Ventilation amid the COVID-19 Outbreak: Wuhan's Experience

Lingzhong Meng et al.

ANESTHESIOLOGY (2020)

Meeting Abstract Critical Care Medicine

FIRST CASE OF COVID-19 COMPLICATED WITH BURKOLDERIA CEPACIA PNEUMONIA AND BACTEREMIA

Heba Osman et al.

CHEST (2020)

Review Public, Environmental & Occupational Health

Systematic review of healthcare-associated Burkholderia cepacia complex outbreaks: presentation, causes and outbreak control

Emmanuel Haefliger et al.

INFECTION PREVENTION IN PRACTICE (2020)

Letter Immunology

Co-infection with SARS-CoV-2 and Influenza A Virus in Patient with Pneumonia, China

Xiaojing Wu et al.

EMERGING INFECTIOUS DISEASES (2020)

Article Infectious Diseases

Co-infection with SARS-CoV-2 and influenza A virus

Shuhei Azekawa et al.

IDCASES (2020)

Article Biotechnology & Applied Microbiology

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Daehwan Kim et al.

NATURE BIOTECHNOLOGY (2019)

Article Gastroenterology & Hepatology

Antibiotics-induced monodominance of a novel gut bacterial order

Falk Hildebrand et al.

Article Biotechnology & Applied Microbiology

Improved metagenomic analysis with Kraken 2

Derrick E. Wood et al.

GENOME BIOLOGY (2019)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Microbiology

Metatranscriptome of human faecal microbial communities in a cohort of adult men

Galeb S. Abu-Ali et al.

NATURE MICROBIOLOGY (2018)

Article Microbiology

Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis

Jean Y. H. Lee et al.

NATURE MICROBIOLOGY (2018)

Review Immunology

The respiratory tract microbiome and lung inflammation: a two-way street

G. B. Huffnagle et al.

MUCOSAL IMMUNOLOGY (2017)

Review Microbiology

The microbiota of the respiratory tract: gatekeeper to respiratory health

Wing Ho Man et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Review Microbiology

Secondary Bacterial Infections Associated with Influenza Pandemics

Denise E. Morris et al.

FRONTIERS IN MICROBIOLOGY (2017)

Review Immunology

Control of Phagocytosis by Microbial Pathogens

Eileen Uribe-Querol et al.

FRONTIERS IN IMMUNOLOGY (2017)

Review Microbiology

SARS and MERS: recent insights into emerging coronaviruses

Emmie de Wit et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study

Toru Takeshita et al.

SCIENTIFIC REPORTS (2016)

Article Evolutionary Biology

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis

Guillaume Meric et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Letter Biochemical Research Methods

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Duy Tin Truong et al.

NATURE METHODS (2015)

Article Respiratory System

Burkholderia Species Infections in Patients with Cystic Fibrosis in British Columbia, Canada 30 Years' Experience

James E. A. Zlosnik et al.

ANNALS OF THE AMERICAN THORACIC SOCIETY (2015)

Review Infectious Diseases

Pathogenesis of influenza-induced acute respiratory distress syndrome

Kirsty R. Short et al.

LANCET INFECTIOUS DISEASES (2014)

Article Multidisciplinary Sciences

Humans Have Antibodies against a Plant Virus: Evidence from Tobacco Mosaic Virus

Ruolan Liu et al.

PLOS ONE (2013)

Article Biochemical Research Methods

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Evguenia Kopylova et al.

BIOINFORMATICS (2012)

Article Immunology

Impact of the 2009 Influenza Pandemic on Pneumococcal Pneumonia Hospitalizations in the United States

Daniel M. Weinberger et al.

JOURNAL OF INFECTIOUS DISEASES (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Deciphering the Role of RND Efflux Transporters in Burkholderia cenocepacia

Silvia Bazzini et al.

PLOS ONE (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Infectious Diseases

Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence

P. Drevinek et al.

CLINICAL MICROBIOLOGY AND INFECTION (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Microbiology

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients

Matthew T. G. Holden et al.

JOURNAL OF BACTERIOLOGY (2009)

Review Microbiology

Staphylococcus epidermidis - the 'accidental' pathogen

Michael Otto

NATURE REVIEWS MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

RNA viral community in human feces: Prevalence of plant pathogenic viruses

T Zhang et al.

PLOS BIOLOGY (2006)

Article Immunology

Risk factors for ventilator-associated pneumonia: From epidemiology to patient management

MJM Bonten et al.

CLINICAL INFECTIOUS DISEASES (2004)

Article Dentistry, Oral Surgery & Medicine

Distribution of selected bacterial species on intraoral surfaces

DL Mager et al.

JOURNAL OF CLINICAL PERIODONTOLOGY (2003)