4.6 Article

MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

miRDB: an online database for prediction of functional microRNA targets

Yuhao Chen et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Plant Sciences

miR156b from Soybean CMS Line Modulates Floral Organ Development

Xianlong Ding et al.

JOURNAL OF PLANT BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Comparative Analysis of Proteomics and Transcriptomics during Fertility Transition in a Two-Line Hybrid Rice Line Wuxiang S

Hao Chen et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemical Research Methods

miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts

Albert Pla et al.

PLOS COMPUTATIONAL BIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Comparative Transcriptome Analysis between Fertile and CMS Flower Buds in Wucai (Brassica campestris L.)

Guohu Chen et al.

BMC GENOMICS (2018)

Article Plant Sciences

Osa-miR169 Negatively Regulates Rice Immunity against the Blast Fungus Magnaporthe oryzae

Yan Li et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Plant Sciences

Plastid Genotyping Reveals the Uniformity of Cytoplasmic Male Sterile-T Maize Cytoplasms

Massimo Bosacchi et al.

PLANT PHYSIOLOGY (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Plant Sciences

Stress-induced early flowering is mediated by miR169 in Arabidopsis thaliana

Miao Yun Xu et al.

JOURNAL OF EXPERIMENTAL BOTANY (2014)

Article Biochemistry & Molecular Biology

ptr-MIR169 is a posttranscriptional repressor of PtrHAP2 during vegetative bud dormancy period of aspen (Populus tremuloides) trees

Rewati Potkar et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

Zhiyong Ni et al.

PLANT MOLECULAR BIOLOGY (2013)

Article Genetics & Heredity

Cytoplasmic male sterility-regulated novel microRNAs from maize

Yaou Shen et al.

FUNCTIONAL & INTEGRATIVE GENOMICS (2011)

Article Biochemical Research Methods

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Likun Wang et al.

BIOINFORMATICS (2010)

Article Plant Sciences

High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism

Yijun Meng et al.

JOURNAL OF EXPERIMENTAL BOTANY (2010)

Article Plant Sciences

Transcriptome-wide identification of microRNA targets in rice

Yong-Fang Li et al.

PLANT JOURNAL (2010)

Article Biotechnology & Applied Microbiology

Gene ontology analysis for RNA-seq: accounting for selection bias

Matthew D. Young et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

Charles Addo-Quaye et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana

Robert Grant-Downton et al.

BMC GENOMICS (2009)

Review Biochemistry & Molecular Biology

MicroRNAs: Target Recognition and Regulatory Functions

David P. Bartel

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

Charles Addo-Quaye et al.

CURRENT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

KEGG for linking genomes to life and the environment

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Genetics & Heredity

Cytoplasmic male sterility and restoration of pollen fertility in higher plants

M. K. Ivanov et al.

RUSSIAN JOURNAL OF GENETICS (2007)

Article Cell Biology

A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

Ramya Rajagopalan et al.

GENES & DEVELOPMENT (2006)

Article Plant Sciences

Conservation and divergence of plant microRNA genes

BH Zhang et al.

PLANT JOURNAL (2006)

Article Biochemistry & Molecular Biology

Prediction of plant microRNA targets

MW Rhoades et al.