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Chances and Challenges of New Genetic Screening Technologies (NIPT) in Prenatal Medicine from a Clinical Perspective: A Narrative Review

Journal

GENES
Volume 12, Issue 4, Pages -

Publisher

MDPI
DOI: 10.3390/genes12040501

Keywords

non-invasive prenatal testing (NIPT); non-invasive prenatal diagnosis (NIPD); sex chromosome anomaly (SCA); copy number variant (CNV); rare autosomal trisomy (RAT); chromosomal microarray (CMA); whole exome sequencing (WES); whole genome sequencing (WGS)

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Since the 1960s, screening for Down syndrome has advanced significantly, with methods such as first trimester screening and non-invasive prenatal testing now being widely used. In parallel, new technologies like chromosomal microarrays and sequencing methods have expanded diagnostic capabilities for fetal anomalies.
In 1959, 63 years after the death of John Langdon Down, Jerome Lejeune discovered trisomy 21 as the genetic reason for Down syndrome. Screening for Down syndrome has been applied since the 1960s by using maternal age as the risk parameter. Since then, several advances have been made. First trimester screening, combining maternal age, maternal serum parameters and ultrasound findings, emerged in the 1990s with a detection rate (DR) of around 90-95% and a false positive rate (FPR) of around 5%, also looking for trisomy 13 and 18. With the development of high-resolution ultrasound, around 50% of fetal anomalies are now detected in the first trimester. Non-invasive prenatal testing (NIPT) for trisomy 21, 13 and 18 is a highly efficient screening method and has been applied as a first-line or a contingent screening approach all over the world since 2012, in some countries without a systematic screening program. Concomitant with the rise in technology, the possibility of screening for other genetic conditions by analysis of cfDNA, such as sex chromosome anomalies (SCAs), rare autosomal anomalies (RATs) and microdeletions and duplications, is offered by different providers to an often not preselected population of pregnant women. Most of the research in the field is done by commercial providers, and some of the tests are on the market without validated data on test performance. This raises difficulties in the counseling process and makes it nearly impossible to obtain informed consent. In parallel with the advent of new screening technologies, an expansion of diagnostic methods has begun to be applied after invasive procedures. The karyotype has been the gold standard for decades. Chromosomal microarrays (CMAs) able to detect deletions and duplications on a submicroscopic level have replaced the conventional karyotyping in many countries. Sequencing methods such as whole exome sequencing (WES) and whole genome sequencing (WGS) tremendously amplify the diagnostic yield in fetuses with ultrasound anomalies.

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