4.8 Article

Monitoring of hospital sewage shows both promise and limitations as an early-warning system for carbapenemase-producing Enterobacterales in a low-prevalence setting

Related references

Note: Only part of the references are listed.
Article Environmental Sciences

Evidence for selection of multi-resistant E. coli by hospital effluent

Nadine Kraupner et al.

Summary: The study found that effluent from hospitals can select for multi-resistant bacteria, while effluent from municipal wastewater treatment plants does not have a significant impact on resistance selection. However, influent from the WWTP may have a small selective effect on beta-lactam-resistant strains in certain cases. Further research is needed to clarify the contribution of different selective agents in resistance selection.

ENVIRONMENT INTERNATIONAL (2021)

Review Microbiology

The Global Ascendency of OXA-48-Type Carbapenemases

Johann D. D. Pitout et al.

CLINICAL MICROBIOLOGY REVIEWS (2020)

Editorial Material Multidisciplinary Sciences

Using sewage for surveillance of antimicrobial resistance

Frank M. Aarestrup et al.

SCIENCE (2020)

Article Environmental Sciences

Biofilms in hospital effluents as a potential crossroads for carbapenemase-encoding strains

J. Ory et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Article Environmental Sciences

A conceptual framework for the environmental surveillance of antibiotics and antibiotic resistance

Patricia M. C. Huijbers et al.

ENVIRONMENT INTERNATIONAL (2019)

Article Biochemical Research Methods

NanoPack: visualizing and processing long-read sequencing data

Wouter De Coster et al.

BIOINFORMATICS (2018)

Article Infectious Diseases

Subsequent infection with extended-spectrum β-lactamase-producing Enterobacteriaceae in patients with prior infection or fecal colonization

Anna Lindblom et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2018)

Article Infectious Diseases

Related carbapenemase-producing Klebsiella isolates detected in both a hospital and associated aquatic environment in Sweden

Faisal Ahmad Khan et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2018)

Article Public, Environmental & Occupational Health

Sink traps as the source of transmission of OXA-48-producing Serratia marcescens in an intensive care unit

Gili Regev-Yochay et al.

INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2018)

Article Immunology

The Epidemiology of Carbapenem-Resistant Enterobacteriaceae: The Impact and Evolution of a Global Menace

Latania K. Logan et al.

JOURNAL OF INFECTIOUS DISEASES (2017)

Article Biochemical Research Methods

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Letter Infectious Diseases

Carbapenem resistance mediated by blaOXA-181 in Pseudomonas aeruginosa

Daniele Meunier et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)

Article Public, Environmental & Occupational Health

Carbapenemase-producing Enterobacteriaceae in hospital wastewater: a reservoir that may be unrelated to clinical isolates

L. White et al.

JOURNAL OF HOSPITAL INFECTION (2016)

Article Microbiology

Clonal expansion of Escherichia coli ST38 carrying a chromosomally integrated OXA-48 carbapenemase gene

Jane F. Turton et al.

JOURNAL OF MEDICAL MICROBIOLOGY (2016)

Article Public, Environmental & Occupational Health

Quantitative evaluation of extended-spectrum β-lactamase-producing Escherichia coli strains in the wastewater of a French teaching hospital and relation to patient strain

Laurence Drieux et al.

ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2016)

Letter Public, Environmental & Occupational Health

High Counts of Carbapenemase-Producing Enterobacteriaceae in Hospital Sewage

Tse Hsien Koh et al.

INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2015)

Article Biochemical Research Methods

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink et al.

NATURE METHODS (2015)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Microbiology

CarbAcineto NP Test for Rapid Detection of Carbapenemase-Producing Acinetobacter spp.

Laurent Dortet et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2014)

Article Microbiology

Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48

Laurent Poirel et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)

Article Infectious Diseases

Rapid detection of carbapenemase genes by multiplex real-time PCR

Jussimara Monteiro et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

First identification of Pseudomonas aeruginosa isolates producing a KPC-type carbapenem-hydrolyzing β-lactamase

Maria Virginia Villegas et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2007)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

ISfinder: the reference centre for bacterial insertion sequences

P. Siguier et al.

NUCLEIC ACIDS RESEARCH (2006)