Related references
Note: Only part of the references are listed.Evidence for selection of multi-resistant E. coli by hospital effluent
Nadine Kraupner et al.
ENVIRONMENT INTERNATIONAL (2021)
The Global Ascendency of OXA-48-Type Carbapenemases
Johann D. D. Pitout et al.
CLINICAL MICROBIOLOGY REVIEWS (2020)
Using sewage for surveillance of antimicrobial resistance
Frank M. Aarestrup et al.
SCIENCE (2020)
Biofilms in hospital effluents as a potential crossroads for carbapenemase-encoding strains
J. Ory et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence
Katariina M. M. Parnanen et al.
SCIENCE ADVANCES (2019)
Repeated Isolation of Extended-Spectrum-β-Lactamase-Positive Escherichia coli Sequence Types 648 and 131 from Community Wastewater Indicates that Sewage Systems Are Important Sources of Emerging Clones of Antibiotic-Resistant Bacteria
Erik Paulshus et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
A conceptual framework for the environmental surveillance of antibiotics and antibiotic resistance
Patricia M. C. Huijbers et al.
ENVIRONMENT INTERNATIONAL (2019)
Population-level surveillance of antibiotic resistance in Escherichia coli through sewage analysis
Marion Hutinel et al.
EUROSURVEILLANCE (2019)
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals
Sarah Lepuschitz et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
NanoPack: visualizing and processing long-read sequencing data
Wouter De Coster et al.
BIOINFORMATICS (2018)
Subsequent infection with extended-spectrum β-lactamase-producing Enterobacteriaceae in patients with prior infection or fecal colonization
Anna Lindblom et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2018)
Shewanella species as the origin of bla(OXA-48) genes: insights into gene diversity, associated phenotypes and possible transfer mechanisms
Marta Tacao et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2018)
Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance
Rebecca A. Weingarten et al.
MBIO (2018)
A Large, Refractory Nosocomial Outbreak of Klebsiella pneumoniae Carbapenemase-Producing Escherichia coli Demonstrates Carbapenemase Gene Outbreaks Involving Sink Sites Require Novel Approaches to Infection Control
V. Decraene et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2018)
Related carbapenemase-producing Klebsiella isolates detected in both a hospital and associated aquatic environment in Sweden
Faisal Ahmad Khan et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2018)
Sink traps as the source of transmission of OXA-48-producing Serratia marcescens in an intensive care unit
Gili Regev-Yochay et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2018)
Community carriage of ESBL-producing Escherichia coli is associated with strains of low pathogenicity: a Swedish nationwide study
Sofia Ny et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Indistinguishable NDM-producing Escherichia coli isolated from recreational waters, sewage, and a clinical specimen in Ireland, 2016 to 2017
B. M. Mahon et al.
EUROSURVEILLANCE (2017)
The Epidemiology of Carbapenem-Resistant Enterobacteriaceae: The Impact and Evolution of a Global Menace
Latania K. Logan et al.
JOURNAL OF INFECTIOUS DISEASES (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
A comparison of extended spectrum β-lactamase producing Escherichia coli from clinical, recreational water and wastewater samples associated in time and location
Silje B. Jorgensen et al.
PLOS ONE (2017)
The Hospital Water Environment as a Reservoir for Carbapenem-Resistant Organisms Causing Hospital-Acquired Infections-A Systematic Review of the Literature
Alice E. Kizny Gordon et al.
CLINICAL INFECTIOUS DISEASES (2017)
Persisting transmission of carbapenemase-producing Klebsiella pneumoniae due to an environmental reservoir in a university hospital, France, 2012 to 2014
B. Clarivet et al.
EUROSURVEILLANCE (2016)
Carbapenem resistance mediated by blaOXA-181 in Pseudomonas aeruginosa
Daniele Meunier et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)
Carbapenemase-producing Enterobacteriaceae in hospital wastewater: a reservoir that may be unrelated to clinical isolates
L. White et al.
JOURNAL OF HOSPITAL INFECTION (2016)
Clonal expansion of Escherichia coli ST38 carrying a chromosomally integrated OXA-48 carbapenemase gene
Jane F. Turton et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2016)
Population Screening Using Sewage Reveals Pan-Resistant Bacteria in Hospital and Community Samples
Lital Meir-Gruber et al.
PLOS ONE (2016)
Quantitative evaluation of extended-spectrum β-lactamase-producing Escherichia coli strains in the wastewater of a French teaching hospital and relation to patient strain
Laurence Drieux et al.
ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2016)
High Counts of Carbapenemase-Producing Enterobacteriaceae in Hospital Sewage
Tse Hsien Koh et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
CarbAcineto NP Test for Rapid Detection of Carbapenemase-Producing Acinetobacter spp.
Laurent Dortet et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Molecular Analysis of OXA-48-Carrying Conjugative IncL/M-Like Plasmids in Clinical Isolates of Klebsiella pneumoniae in Ireland
Karen Power et al.
MICROBIAL DRUG RESISTANCE (2014)
Shift of CTX-M genotypes has determined the increased prevalence of extended-spectrum β-lactamase-producing Escherichia coli in south-western Sweden
L. Helldal et al.
CLINICAL MICROBIOLOGY AND INFECTION (2013)
Comparison of extended-spectrum-β-lactamase (ESBL) carrying Escherichia coli from sewage sludge and human urinary tract infection
G. Zarfel et al.
ENVIRONMENTAL POLLUTION (2013)
Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48
Laurent Poirel et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)
Rapid detection of carbapenemase genes by multiplex real-time PCR
Jussimara Monteiro et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study
Timothy R. Walsh et al.
LANCET INFECTIOUS DISEASES (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
First identification of Pseudomonas aeruginosa isolates producing a KPC-type carbapenem-hydrolyzing β-lactamase
Maria Virginia Villegas et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
ISfinder: the reference centre for bacterial insertion sequences
P. Siguier et al.
NUCLEIC ACIDS RESEARCH (2006)