Related references
Note: Only part of the references are listed.Antibiotic resistome in the livestock and aquaculture industries: Status and solutions
Yi Zhao et al.
CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY (2021)
Antibiotic resistance in foodborne bacteria
Manuela Canica et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2019)
Occurrence and distribution of antibiotics and resistance genes in greenhouse and open-field agricultural soils in China
Qingtao Zeng et al.
CHEMOSPHERE (2019)
Effect of antibiotic use and composting on antibiotic resistance gene abundance and resistome risks of soils receiving manure-derived amendments
Chaoqi Chen et al.
ENVIRONMENT INTERNATIONAL (2019)
Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application
Edward Lopatto et al.
PLOS ONE (2019)
Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems
Schuyler D. Smith et al.
PLOS ONE (2019)
Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm
Suraj Gupta et al.
MICROBIOME (2019)
Composting increased persistence of manure-borne antibiotic resistance genes in soils with different fertilization history
Min Xu et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
Microbiota and Antibiotic Resistome of Lettuce Leaves and Radishes Grown in Soils Receiving Manure-Based Amendments Derived From Antibiotic-Treated Cows
Kendall Fogler et al.
FRONTIERS IN SUSTAINABLE FOOD SYSTEMS (2019)
Fecal Indicator Bacteria and Antibiotic Resistance Genes in Storm Runoff from Dairy Manure and Compost-Amended Vegetable Plots
Kyle Jacobs et al.
JOURNAL OF ENVIRONMENTAL QUALITY (2019)
Effect of composting and soil type on dissipation of veterinary antibiotics in land-applied manures
Chaoqi Chen et al.
CHEMOSPHERE (2018)
Superheat: An R Package for Creating Beautiful and Extendable Heatmaps for Visualizing Compi-x Data
Rebecca L. Barter et al.
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS (2018)
Fate of Pirlimycin and Antibiotic-Resistant Fecal Coliforms in Field Plots Amended with Dairy Manure or Compost during Vegetable Cultivation
Lauren Wind et al.
JOURNAL OF ENVIRONMENTAL QUALITY (2018)
Increased occurrence of heavy metals, antibiotics and resistance genes in surface soil after long-term application of manure
Ting Guo et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2018)
Aerobic composting reduces antibiotic resistance genes in cattle manure and the resistome dissemination in agricultural soils
Min Gou et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2018)
Long-term effects of manure and chemical fertilizers on soil antibiotic resistome
Wan-Ying Xie et al.
SOIL BIOLOGY & BIOCHEMISTRY (2018)
Impact of sequencing depth on the characterization of the microbiome and resistome
Rahat Zaheer et al.
SCIENTIFIC REPORTS (2018)
Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection
An Ni Zhang et al.
MICROBIOME (2018)
MetaCompare: a computational pipeline for prioritizing environmental resistome risk
Min Oh et al.
FEMS MICROBIOLOGY ECOLOGY (2018)
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
Baofeng Jia et al.
NUCLEIC ACIDS RESEARCH (2017)
Fate and Effect of Antibiotics in Beef and Dairy Manure during Static and Turned Composting
Partha Ray et al.
JOURNAL OF ENVIRONMENTAL QUALITY (2017)
Impact of dairy manure pre-application treatment on manure composition, soil dynamics of antibiotic resistance genes, and abundance of antibiotic-resistance genes on vegetables at harvest
Yuan-Ching Tien et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2017)
A Basic Guide to Real Time PCR in Microbial Diagnostics: Definitions, Parameters, and Everything
Petr Kralik et al.
FRONTIERS IN MICROBIOLOGY (2017)
A sensitive short read homology search tool for paired-end read sequencing data
Prapaporn Techa-Angkoon et al.
BMC BIOINFORMATICS (2017)
Novel Antibiotic Resistance Determinants from Agricultural Soil Exposed to Antibiotics Widely Used in Human Medicine and Animal Farming
Calvin Ho-Fung Lau et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting
Xun Qian et al.
BIORESOURCE TECHNOLOGY (2016)
Molecular Methods for Assessment of Antibiotic Resistance in Agricultural Ecosystems: Prospects and Challenges
Elizabeth Luby et al.
JOURNAL OF ENVIRONMENTAL QUALITY (2016)
Metagenomic applications in environmental monitoring and bioremediation
Stephen M. Techtmann et al.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2016)
MetaStorm: A Public Resource for Customizable Metagenomics Annotation
Gustavo Arango-Argoty et al.
PLOS ONE (2016)
Temporal changes of antibiotic-resistance genes and bacterial communities in two contrasting soils treated with cattle manure
Hang-Wei Hu et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Chandan Pal et al.
BMC GENOMICS (2015)
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
Bing Li et al.
ISME JOURNAL (2015)
Antibiotic resistance genes in manure-amended soil and vegetables at harvest
Feng-Hua Wang et al.
JOURNAL OF HAZARDOUS MATERIALS (2015)
Global trends in antimicrobial use in food animals
Thomas P. Van Boeckel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Prevalence of Antibiotic Resistance Genes and Bacterial Pathogens in Long-Term Manured Greenhouse Soils As Revealed by Metagenomic Survey
Hua Fang et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
Michael R. Gillings et al.
ISME JOURNAL (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin
Lindsey Chambers et al.
PLOS ONE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Functional metagenomic characterization of antibiotic resistance genes in agricultural soils from China
Jian Qiang Su et al.
ENVIRONMENT INTERNATIONAL (2014)
Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization
Nikolina Udikovic-Kolic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
The Potential of Metagenomic Approaches for Understanding Soil Microbial Processes
David D. Myrold et al.
SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2014)
Impact of Manure Fertilization on the Abundance of Antibiotic-Resistant Bacteria and Frequency of Detection of Antibiotic Resistance Genes in Soil and on Vegetables at Harvest
Romain Marti et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Increased Abundance and Transferability of Resistance Genes after Field Application of Manure from Sulfadiazine-Treated Pigs
Sven Jechalke et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Human Health Risk Assessment (HHRA) for Environmental Development and Transfer of Antibiotic Resistance
Nicholas J. Ashbolt et al.
ENVIRONMENTAL HEALTH PERSPECTIVES (2013)
The soil resistome: The anthropogenic, the native, and the unknown
Eddie Cytryn
SOIL BIOLOGY & BIOCHEMISTRY (2013)
Human housekeeping genes, revisited
Eli Eisenberg et al.
TRENDS IN GENETICS (2013)
How much metagenomic sequencing is enough to achieve a given goal?
Jiajia Ni et al.
SCIENTIFIC REPORTS (2013)
Correlation Between Upstream Human Activities and Riverine Antibiotic Resistance Genes
Amy Pruden et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2012)
A Review of Antibiotic Use in Food Animals: Perspective, Policy, and Potential
Timothy F. Landers et al.
PUBLIC HEALTH REPORTS (2012)
Antibiotic resistance gene spread due to manure application on agricultural fields
Holger Heuer et al.
CURRENT OPINION IN MICROBIOLOGY (2011)
Antibiotics and the resistant microbiome
Morten O. A. Sommer et al.
CURRENT OPINION IN MICROBIOLOGY (2011)
Antibiotic resistance is ancient
Vanessa M. D'Costa et al.
NATURE (2011)
Antibiotic resistance in the environment: a link to the clinic?
Gerard D. Wright
CURRENT OPINION IN MICROBIOLOGY (2010)
Identification of Antibiotic-Resistance-Gene Molecular Signatures Suitable as Tracers of Pristine River, Urban, and Agricultural Sources
H. Storteboom et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2010)
Selected Antimicrobial Resistance during Composting of Manure from Cattle Administered Sub-Therapeutic Antimicrobials
Ranjana Sharma et al.
JOURNAL OF ENVIRONMENTAL QUALITY (2009)
Expanding the soil antibiotic resistome: exploring environmental diversity
Vanessa M. D'Costa et al.
CURRENT OPINION IN MICROBIOLOGY (2007)
More than obvious: Better methods for interpreting nondetect data
DR Helsel
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2005)