Related references
Note: Only part of the references are listed.Evaluation of three commercial assays for SARS-CoV-2 molecular detection in upper respiratory tract samples
Flora Marzia Liotti et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2021)
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
Erik Volz et al.
CELL (2021)
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic
Lewis F. Buss et al.
SCIENCE (2021)
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Louis du Plessis et al.
SCIENCE (2021)
Evidence of escape of SARS-CoV-2 variant B.1.351 from natural and vaccine-induced sera
Daming Zhou et al.
CELL (2021)
Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies
Allison J. Greaney et al.
CELL HOST & MICROBE (2021)
S-Variant SARS-CoV-2 Lineage B1.1.7 Is Associated With Significantly Higher Viral Load in Samples Tested by TaqPath Polymerase Chain Reaction
Michael Kidd et al.
JOURNAL OF INFECTIOUS DISEASES (2021)
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence
Ester C. Sabino et al.
LANCET (2021)
Transmission of COVID-19 in 282 clusters in Catalonia, Spain: a cohort study
Michael Marks et al.
LANCET INFECTIOUS DISEASES (2021)
Detection of a SARS-CoV-2 variant of concern in South Africa
Houriiyah Tegally et al.
NATURE (2021)
mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants
Zijun Wang et al.
NATURE (2021)
SARS-CoV-2 501Y.V2 escapes neutralization by South African COVID-19 donor plasma
Constantinos Kurt Wibmer et al.
NATURE MEDICINE (2021)
Detection of SARS-CoV-2 lineage P.1 in patients from a region with exponentially increasing hospitalisation rate, February 2021, Rio Grande do Sul, Southern Brazil
Andreza Francisco Martins et al.
EUROSURVEILLANCE (2021)
Assessment of protection against reinfection with SARS-CoV-2 among 4 million PCR-tested individuals in Denmark in 2020: a population-level observational study
Christian Holm Hansen et al.
LANCET (2021)
Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma
Sandile Cele et al.
NATURE (2021)
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England
Erik Volz et al.
NATURE (2021)
Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul, Brazil
Ronaldo da Silva Francisco Jr et al.
VIRUS RESEARCH (2021)
Novel SARS-CoV-2 Variant in Travelers from Brazil to Japan
Takahisa Fujino et al.
EMERGING INFECTIOUS DISEASES (2021)
Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020
Ingra Morales Claro et al.
EMERGING INFECTIOUS DISEASES (2021)
Open access epidemiological data from the COVID-19 outbreak
Bo Xu et al.
LANCET INFECTIOUS DISEASES (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking
Sarah F. McGough et al.
PLoS Computational Biology (2020)
Routes for COVID-19 importation in Brazil
Darlan Da S. Candido et al.
JOURNAL OF TRAVEL MEDICINE (2020)
Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor
Jun Lan et al.
NATURE (2020)
The Allplex 2019-nCoV (Seegene) assay: which performances are for SARS-CoV-2 infection diagnosis?
Eric Farfour et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2020)
Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding
Tyler N. Starr et al.
CELL (2020)
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Andrew Rambaut et al.
NATURE MICROBIOLOGY (2020)
Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil
William Marciel de Souza et al.
NATURE HUMAN BEHAVIOUR (2020)
Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology
Luca Piccoli et al.
CELL (2020)
Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe
Seth Flaxman et al.
NATURE (2020)
SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects
Antoni G. Wrobel et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2020)
Modeling future spread of infections via mobile geolocation data and population dynamics. An application to COVID-19 in Brazil
Pedro S. Peixoto et al.
PLOS ONE (2020)
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan S. Candido et al.
SCIENCE (2020)
Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset
Benny Borremans et al.
ELIFE (2020)
Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer
Victoria A. Avanzato et al.
CELL (2020)
Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host
Bina Choi et al.
NEW ENGLAND JOURNAL OF MEDICINE (2020)
Multiple Introductions Followed by Ongoing Community Spread of SARS-CoV-2 at One of the Largest Metropolitan Areas of Northeast Brazil
Marcelo Henrique Santos Paiva et al.
VIRUSES-BASEL (2020)
State-level tracking of COVID-19 in the United States
H. Juliette T. Unwin et al.
NATURE COMMUNICATIONS (2020)
Inference of COVID-19 epidemiological distributions from Brazilian hospital data
Iwona Hawryluk et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2020)
Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants
Yiska Weisblum et al.
ELIFE (2020)
SARS-CoV-2 antibody prevalence in Brazil: results from two successive nationwide serological household surveys
Pedro C. Hallal et al.
LANCET GLOBAL HEALTH (2020)
Importation and early local transmission of COVID-19 in Brazil, 2020
Jaqueline Goes de Jesus et al.
REVISTA DO INSTITUTO DE MEDICINA TROPICAL DE SAO PAULO (2020)
Genomic and phylogenetic characterisation of an imported case of SARS-CoV-2 in Amazonas State, Brazil
Valdinete Alves do Nascimento et al.
MEMORIAS DO INSTITUTO OSWALDO CRUZ (2020)
The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing
Joilson Xavier et al.
EMERGING MICROBES & INFECTIONS (2020)
Divergence dating using mixed effects clock modelling: An application to HIV-1
Magda Bletsa et al.
VIRUS EVOLUTION (2019)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
GISAID: Global initiative on sharing all influenza data - from vision to reality
Yuelong Shu et al.
EUROSURVEILLANCE (2017)
1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America
Michael Worobey et al.
NATURE (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
Improving Bayesian Population Dynamics Inference: A Coalescent-Based Model for Multiple Loci
Mandev S. Gill et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
Daniel L. Ayres et al.
SYSTEMATIC BIOLOGY (2012)
Detecting Individual Sites Subject to Episodic Diversifying Selection
Ben Murrell et al.
PLOS GENETICS (2012)
Tablet-next generation sequence assembly visualization
Iain Milne et al.
BIOINFORMATICS (2010)
Bayesian random local clocks, or one rate to rule them all
Alexei J. Drummond et al.
BMC BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Identification of two critical amino acid residues of the severe acute respiratory syndrome coronavirus spike protein for its variation in zoonotic tropism transition via a double substitution strategy
XX Qu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Receptor and viral determinants of SARS-coronavirus adaptation to human ACE2
WH Li et al.
EMBO JOURNAL (2005)
HyPhy: hypothesis testing using phylogenies
SLK Pond et al.
BIOINFORMATICS (2005)
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
HD Song et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Testing a molecular clock without an outgroup: Derivations of induced priors on branch-length restrictions in a Bayesian framework
MA Suchard et al.
SYSTEMATIC BIOLOGY (2003)