Related references
Note: Only part of the references are listed.Integrative approaches for analysis of mRNA and microRNA high-throughput data
Petr V. Nazarov et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
Cross-Linking Ligation and Sequencing of Hybrids (qCLASH) Reveals an Unpredicted miRNA Targetome in Melanoma Cells
Ines Kozar et al.
CANCERS (2021)
The human box C/D snoRNA U3 is a miRNA source and miR-U3 regulates expression of sortin nexin 27
Nicolas Lemus-Diaz et al.
NUCLEIC ACIDS RESEARCH (2020)
Long non-coding RNA snaR is involved in the metastasis of liver cancer possibly through TGF-1
Zhitian Shi et al.
ONCOLOGY LETTERS (2019)
Identification of murine gammaherpesvirus 68 miRNA-mRNA hybrids reveals miRNA target conservation among gammaherpesviruses including host translation and protein modification machinery
Whitney L. Bullard et al.
PLOS PATHOGENS (2019)
The Non-Canonical Aspects of MicroRNAs: Many Roads to Gene Regulation
Christiaan J. Stavast et al.
CELLS (2019)
miRBase: from microRNA sequences to function
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2019)
miRNA Targeting: Growing beyond the Seed
Laura B. Chipman et al.
TRENDS IN GENETICS (2019)
The biochemical basis of microRNA targeting efficacy
Sean E. McGeary et al.
SCIENCE (2019)
Northern Blot with IR Fluorescent Probes: Strategies for Probe Preparation
Christopher Fields et al.
BIO-PROTOCOL (2019)
Modified Cross-Linking, Ligation, and Sequencing of Hybrids (qCLASH) Identifies Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Targets in Endothelial Cells
Lauren A. Gay et al.
JOURNAL OF VIROLOGY (2018)
Computational analysis of ribonomics datasets identifies long non-coding RNA targets of γ-herpesviral miRNAs
Sunantha Sethuraman et al.
NUCLEIC ACIDS RESEARCH (2018)
Dicer cleaves 5′-extended microRNA precursors originating from RNA polymerase II transcription start sites
Peike Sheng et al.
NUCLEIC ACIDS RESEARCH (2018)
LncRNA snaR upregulates GRB2-associated binding protein 2 and promotes proliferation of ovarian carcinoma cells
Yiping Huang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)
A novel class of microRNA-recognition elements that function only within open reading frames
Kai Zhang et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Near-infrared fluorescent northern blot
Bret R. Miller et al.
RNA (2018)
microRNA target prediction programs predict many false positives
Natalia Pinzon et al.
GENOME RESEARCH (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Long Noncoding RNA snaR Regulates Proliferation, Migration and Invasion of Triple-negative Breast Cancer Cells
Jeeyeon Lee et al.
ANTICANCER RESEARCH (2016)
Pairing beyond the Seed Supports MicroRNA Targeting Specificity
James P. Broughton et al.
MOLECULAR CELL (2016)
Re-evaluation of the roles of DROSHA, Exportin 5, and DICER in microRNA biogenesis
Young-Kook Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The role of MicroRNAs in human cancer
Yong Peng et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2016)
Functional Anatomy of the Human Microprocessor
Tuan Anh Nguyen et al.
CELL (2015)
miRNA-target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
Michael J. Moore et al.
NATURE COMMUNICATIONS (2015)
Predicting effective microRNA target sites in mammalian mRNAs
Vikram Agarwal et al.
ELIFE (2015)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Argonaute-Bound Small RNAs from Promoter-Proximal RNA Polymerase II
Jesse R. Zamudio et al.
CELL (2014)
A Long Non-Coding RNA snaR Contributes to 5-Fluorouracil Resistance in Human Colon Cancer Cells
Heejin Lee et al.
MOLECULES AND CELLS (2014)
Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)
Aleksandra Helwak et al.
NATURE PROTOCOLS (2014)
Regulation of microRNA biogenesis
Minju Ha et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)
Hyb: A bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
Anthony J. Travis et al.
METHODS (2014)
Versatile microRNA biogenesis in animals and their viruses
Mingyi Xie et al.
RNA BIOLOGY (2014)
Nm23-H1 Binds to Gelsolin and Inactivates Its Actin-Severing Capacity to Promote Tumor Cell Motility and Metastasis
Natascia Marino et al.
CANCER RESEARCH (2013)
Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
Aleksandra Helwak et al.
CELL (2013)
Mammalian 5′-Capped MicroRNA Precursors that Generate a SingleMicroRNA
Mingyi Xie et al.
CELL (2013)
Dicer-Processed Small RNAs: Rules and Exceptions
David Langenberger et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
Hanbo Chen et al.
BMC BIOINFORMATICS (2011)
Dicer recognizes the 5′ end of RNA for efficient and accurate processing
Jong-Eun Park et al.
NATURE (2011)
The evolution and expression of the snaR family of small non-coding RNAs
Andrew M. Parrott et al.
NUCLEIC ACIDS RESEARCH (2011)
Implication of Metastasis Suppressor NM23-H1 in Maintaining Adherens Junctions and Limiting the Invasive Potential of Human Cancer Cells
Mathieu Boissan et al.
CANCER RESEARCH (2010)
Making RISC
Tomoko Kawamata et al.
TRENDS IN BIOCHEMICAL SCIENCES (2010)
HITS-CLIP: panoramic views of protein-RNA regulation in living cells
Robert B. Darnell
WILEY INTERDISCIPLINARY REVIEWS-RNA (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
Sung Wook Chi et al.
NATURE (2009)
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
Helena Persson et al.
NATURE CELL BIOLOGY (2009)
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
Joshua E. Babiarz et al.
GENES & DEVELOPMENT (2008)
A Human snoRNA with MicroRNA-Like Functions
Christine Ender et al.
MOLECULAR CELL (2008)
The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
Katsutomo Okamura et al.
NATURE (2008)
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Donny D. Licatalosi et al.
NATURE (2008)
Nm23-H1 suppresses metastasis by inhibiting expression of the lysophosphatidic acid receptor EDG2
Christine E. Horak et al.
CANCER RESEARCH (2007)
Mammalian mirtron genes
Eugene Berezikov et al.
MOLECULAR CELL (2007)
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
Andrew Grimson et al.
MOLECULAR CELL (2007)
Intronic microRNA precursors that bypass Drosha processing
J. Graham Ruby et al.
NATURE (2007)
Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution
Andrew M. Parrott et al.
NUCLEIC ACIDS RESEARCH (2007)
A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
Kevin C. Miranda et al.
CELL (2006)
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
BP Lewis et al.
CELL (2005)
Nuclear export of microRNA precursors
E Lund et al.
SCIENCE (2004)
Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
JB Ma et al.
NATURE (2004)
ColorBrewer.org: An online tool for selecting colour schemes for maps
M Harrower et al.
CARTOGRAPHIC JOURNAL (2003)
MicroRNA maturation: stepwise processing and subcellular localization
Y Lee et al.
EMBO JOURNAL (2002)
Role for a bidentate ribonuclease in the initiation step of RNA interference
E Bernstein et al.
NATURE (2001)