Related references
Note: Only part of the references are listed.DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis
Shannon J. McKie et al.
BIOESSAYS (2021)
The Bloom syndrome complex senses RPA-coated single-stranded DNA to restart stalled replication forks
Ann-Marie K. Shorrocks et al.
NATURE COMMUNICATIONS (2021)
A highly processive actinobacterial topoisomerase I - thoughts on Streptomyces' demand for an enzyme with a unique C-terminal domain
Marcin J. Szafran et al.
MICROBIOLOGY-SGM (2020)
The reverse gyrase TopR1 is responsible for the homeostatic control of DNA supercoiling in the hyperthermophilic archaeon Sulfolobus solfataricus
Mohea Couturier et al.
MOLECULAR MICROBIOLOGY (2020)
Supercoiling, R-Loops, Replication and the Functions of Bacterial Type 1A Topoisomerases
Julien Brochu et al.
GENES (2020)
The many lives of type IA topoisomerases
Anna H. Bizard et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
Direct observation of helicase-topoisomerase coupling within reverse gyrase
Xi Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
A β-hairpin is a Minimal Latch that Supports Positive Supercoiling by Reverse Gyrase
Frederic Collin et al.
JOURNAL OF MOLECULAR BIOLOGY (2020)
Topoisomerase III-β is required for efficient replication of positive-sense RNA viruses
K. Reddisiva Prasanth et al.
ANTIVIRAL RESEARCH (2020)
Mechanism of Type IA Topoisomerases
Tumpa Dasgupta et al.
MOLECULES (2020)
PICH and TOP3A cooperate to induce positive DNA supercoiling
Anna H. Bizard et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Competing interaction partners modulate the activity of Sgs1 helicase during DNA end resection
Kristina Kasaciunaite et al.
EMBO JOURNAL (2019)
The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor
Ryan J. Catchpole et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules
Pilar Gutierrez-Escribano et al.
SCIENCE ADVANCES (2019)
Topoisomerase III Acts at the Replication Fork To Remove Precatenanes
Chong M. Lee et al.
JOURNAL OF BACTERIOLOGY (2019)
Supercoiling DNA optically
Graeme A. King et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase
Anna H. Bizard et al.
NUCLEIC ACIDS RESEARCH (2018)
Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA
Thomas J. Nicholls et al.
MOLECULAR CELL (2018)
Quantifying Local Molecular Tension Using Intercalated DNA Fluorescence
Graeme A. King et al.
NANO LETTERS (2018)
Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site
Nan Cao et al.
NUCLEIC ACIDS RESEARCH (2018)
Mutations in TOP3A Cause a Bloom Syndrome-like Disorder
Carol-Anne Martin et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2018)
Force determination in lateral magnetic tweezers combined with TIRF microscopy
J. Madariaga-Marcos et al.
NANOSCALE (2018)
Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study
Bjoern Hellenkamp et al.
NATURE METHODS (2018)
Reconstitution of anaphase DNA bridge recognition and disjunction
Kata Sarlos et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Direct observation of topoisomerase IA gate dynamics
Maria Mills et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases
Kathryn H. Gunn et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
C-terminal lysine repeats in Streptomyces topoisomerase I stabilize the enzyme-DNA complex and confer high enzyme processivity
Agnieszka Strzalka et al.
NUCLEIC ACIDS RESEARCH (2017)
Hyperstretching DNA
Koen Schakenraad et al.
NATURE COMMUNICATIONS (2017)
An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases
Kathryn H. Gunn et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Structural basis of the interaction between Topoisomerase IIIβ and the TDRD3 auxiliary factor
Sakurako Goto-Ito et al.
SCIENTIFIC REPORTS (2017)
Imaging of DNA and Protein-DNA Complexes with Atomic Force Microscopy
Yuri L. Lyubchenko et al.
CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION (2016)
Torsional stress in DNA limits collaboration among reverse gyrase molecules
Taisaku Ogawa et al.
FEBS JOURNAL (2016)
Integrated magnetic tweezers and single-molecule FRET for investigating the mechanical properties of nucleic acid
Xi Long et al.
METHODS (2016)
Sliding sleeves of XRCC4-XLF bridge DNA and connect fragments of broken DNA
Ineke Brouwer et al.
NATURE (2016)
RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals
Muzammil Ahmad et al.
NUCLEIC ACIDS RESEARCH (2016)
DNA and RNA topoisomerase activities of Top3β are promoted by mediator protein Tudor domain-containing protein 3
Grace Ee-Lu Siaw et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A Guide to Magnetic Tweezers and Their Applications
Rupa Sarkar et al.
FRONTIERS IN PHYSICS (2016)
Demystifying PIFE: The Photophysics Behind the Protein-Induced Fluorescence Enhancement Phenomenon in Cy3
Elana M. S. Stennett et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2015)
Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence
Rifka Vlijm et al.
NANOSCALE (2015)
Structural basis for suppression of hypernegative DNA supercoiling by E-coli topoisomerase I
Kemin Tan et al.
NUCLEIC ACIDS RESEARCH (2015)
Direct observation of DNA overwinding by reverse gyrase
Taisaku Ogawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
PICH promotes sister chromatid disjunction and co-operates with topoisomerase II in mitosis
Christian F. Nielsen et al.
NATURE COMMUNICATIONS (2015)
Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting
Rifka Vlijm et al.
PLOS ONE (2015)
Developing a New Biophysical Tool to Combine Magneto-Optical Tweezers with Super-Resolution Fluorescence Microscopy
Zhaokun Zhou et al.
PHOTONICS (2015)
Differential contributions of the latch in Thermotoga maritima reverse gyrase to the binding of single-stranded DNA before and after ATP hydrolysis
Yoandris del Toro Duany et al.
BIOLOGICAL CHEMISTRY (2014)
Coexistence of Twisted, Plectonemic, and Melted DNA in Small Topological Domains
He Meng et al.
BIOPHYSICAL JOURNAL (2014)
Optical Tweezers Analysis of DNA-Protein Complexes
Iddo Heller et al.
CHEMICAL REVIEWS (2014)
The origins and processing of ultra fine anaphase DNA bridges
Ying Liu et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
Arginine Methylation Facilitates the Recruitment of TOP3B to Chromatin to Prevent R Loop Accumulation
Yanzhong Yang et al.
MOLECULAR CELL (2014)
Structural and mechanistic insight into Holliday-junction dissolution by Topoisomerase IIIα and RMI1
Nicolas Bocquet et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III
Ksenia Terekhova et al.
NUCLEIC ACIDS RESEARCH (2014)
Reverse gyrase-recent advances and current mechanistic understanding of positive DNA supercoiling
Pavel Lulchev et al.
NUCLEIC ACIDS RESEARCH (2014)
A highly processive topoisomerase I: studies at the single-molecule level
Marcin Jan Szafran et al.
NUCLEIC ACIDS RESEARCH (2014)
Top3α Is Required during the Convergent Migration Step of Double Holliday Junction Dissolution
Stefanie Hartman Chen et al.
PLOS ONE (2014)
The Dissolution of Double Holliday Junctions
Anna H. Bizard et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2014)
Type IA topoisomerase inhibition by clamp closure
Majety Naga Leelaram et al.
FASEB JOURNAL (2013)
Reverse Gyrase Transiently Unwinds Double-Stranded DNA in an ATP-Dependent Reaction
Agneyo Ganguly et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA
Iddo Heller et al.
NATURE METHODS (2013)
Deletion of TOP3β, a component of FMRP-containing mRNPs, contributes to neurodevelopmental disorders
Georg Stoll et al.
NATURE NEUROSCIENCE (2013)
Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling
Markus G. Rudolph et al.
NUCLEIC ACIDS RESEARCH (2013)
Comparison of DNA decatenation by Escherichia coli topoisomerase IV and topoisomerase III: implications for non-equilibrium topology simplification
Yeonee Seol et al.
NUCLEIC ACIDS RESEARCH (2013)
An N-terminal acidic region of Sgs1 interacts with Rpa70 and recruits Rad53 kinase to stalled forks
Anna Maria Hegnauer et al.
EMBO JOURNAL (2012)
Decatenation of DNA by the S. cerevisiae Sgs1-Top3-Rmi1 and RPA Complex: A Mechanism for Disentangling Chromosomes
Petr Cejka et al.
MOLECULAR CELL (2012)
Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways
Ksenia Terekhova et al.
NUCLEIC ACIDS RESEARCH (2012)
Single-Molecule Study of the DNA Denaturation Phase Transition in the Force-Torsion Space
D. Salerno et al.
PHYSICAL REVIEW LETTERS (2012)
Direct Observation of Strand Passage by DNA-Topoisomerase and Its Limited Processivity
Katsunori Yogo et al.
PLOS ONE (2012)
BLM and RMI1 Alleviate RPA Inhibition of TopoIIIα Decatenase Activity
Jay Yang et al.
PLOS ONE (2012)
Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA
Florian C. Oberstrass et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Quantifying supercoiling-induced denaturation bubbles in DNA
Jozef Adamcik et al.
SOFT MATTER (2012)
The Conformational Flexibility of the Helicase-like Domain from Thermotoga maritima Reverse Gyrase Is Restricted by the Topoisomerase Domain
Yoandris del Toro Duany et al.
BIOCHEMISTRY (2011)
Unlinking of Supercoiled DNA Catenanes by Type IIA Topoisomerases
Alexander Vologodskii
BIOPHYSICAL JOURNAL (2011)
TopR2, the Second Reverse Gyrase of Sulfolobus solfataricus, Exhibits Unusual Properties
Anna Bizard et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Nucleotide-driven conformational changes in the reverse gyrase helicase-like domain couple the nucleotide cycle to DNA processing
Yoandris del Toro Duany et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)
Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions
Andrea Candelli et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)
The latch modulates nucleotide and DNA binding to the helicase-like domain of Thermotoga maritima reverse gyrase and is required for positive DNA supercoiling
Agneyo Ganguly et al.
NUCLEIC ACIDS RESEARCH (2011)
Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation
T. Ramreddy et al.
NUCLEIC ACIDS RESEARCH (2011)
Underwound DNA under Tension: Structure, Elasticity, and Sequence-Dependent Behaviors
Maxim Y. Sheinin et al.
PHYSICAL REVIEW LETTERS (2011)
Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity
Helen Hwang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids
Jan Lipfert et al.
NATURE COMMUNICATIONS (2011)
Human Topoisomerase IIIα Is a Single-stranded DNA Decatenase That Is Stimulated by BLM and RMI1
Jay Yang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
DNA end resection by Dna2-Sgs1-RPA and its stimulation by Top3-Rmi1 and Mre11-Rad50-Xrs2
Petr Cejka et al.
NATURE (2010)
A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases
Bryan H. Schmidt et al.
NATURE (2010)
Rmi1 stimulates decatenation of double Holliday junctions during dissolution by Sgs1-Top3
Petr Cejka et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension
Mina Lee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Crystal Structures of RMI1 and RMI2, Two OB-Fold Regulatory Subunits of the BLM Complex
Feng Wang et al.
STRUCTURE (2010)
Structure and Cellular Roles of the RMI Core Complex from the Bloom Syndrome Dissolvasome
Kelly A. Hoadley et al.
STRUCTURE (2010)
Quantitative Modeling and Optimization of Magnetic Tweezers
Jan Lipfert et al.
BIOPHYSICAL JOURNAL (2009)
Structural studies of type I topoisomerases
Nicole M. Baker et al.
NUCLEIC ACIDS RESEARCH (2009)
Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms
Patrick Forterre et al.
NUCLEIC ACIDS RESEARCH (2009)
Recent advances in optical tweezers
Jeffrey R. Moffitt et al.
ANNUAL REVIEW OF BIOCHEMISTRY (2008)
Transcriptional analysis of the two reverse gyrase encoding genes of Sulfolobus solfataricus P2 in relation to the growth phases and temperature conditions
Florence Garnier et al.
EXTREMOPHILES (2008)
Functional role of BLAP75 in BLM-topoisomerase IIIα-dependent Holliday junction processing
Steven Raynard et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Resolution of converging replication forks by RecQ and topoisomerase III
Catherine Suski et al.
MOLECULAR CELL (2008)
A practical guide to single-molecule FRET
Rahul Roy et al.
NATURE METHODS (2008)
Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy
Keir C. Neuman et al.
NATURE METHODS (2008)
The reverse gyrase helicase-like domain is a nucleotide-dependent switch that is attenuated by the topoisomerase domain
Yoandris del Toro Duany et al.
NUCLEIC ACIDS RESEARCH (2008)
Inhibition of Mg2+ binding and DNA religation by bacterial topoisomerase I via introduction of an additional positive charge into the active site region
Elena P. Sorokin et al.
NUCLEIC ACIDS RESEARCH (2008)
The RecQ helicase-topoisomerase III-Rmi1 complex: a DNA structure-specific 'dissolvasome'?
Hocine W. Mankouri et al.
TRENDS IN BIOCHEMICAL SCIENCES (2007)
Holliday junction processing activity of the BLM-topo IIIα-BLAP75 complex
Wendy Bussen et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the Holliday junction
Sungchul Hohng et al.
SCIENCE (2007)
Binding and activation of DNA topoisomerase III by the Rmi1 subunit
Chi-Fu Chen et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism
Bhupesh Taneja et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges
Kok-Lung Chan et al.
EMBO JOURNAL (2007)
Development of autoimmunity in mice lacking DNA topoisomerase 3β
Kelvin Y. Kwan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
A common topology for bacterial and eukaryotic transcription initiation?
Andrew Travers et al.
EMBO REPORTS (2007)
PICH, a centromere-associated SNF2 family ATPase, is regulated by Plk1 and required for the spindle checkpoint
Christoph Baumann et al.
CELL (2007)
Type IA topoisomerases: A simple puzzle?
Thierry Viard et al.
BIOCHIMIE (2007)
Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers
Joost van Mameren et al.
BIOPHYSICAL JOURNAL (2006)
Topoisomerase IIIα and Bloom's helicase can resolve a mobile double Holliday junction substrate through convergent branch migration
Jody L. Plank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Crystal structure of full length topoisomerase I from Thermotoga maritima
Guido Hansen et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Passive all-optical force clamp for high-resolution laser trapping
WJ Greenleaf et al.
PHYSICAL REVIEW LETTERS (2005)
A role for topoisomerase III in a recombination pathway alternative to RuvABC
CR Lopez et al.
MOLECULAR MICROBIOLOGY (2005)
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB
DA Koster et al.
NATURE (2005)
Optical torque wrench: Angular trapping, rotation, and torque detection of quartz microparticles
A La Porta et al.
PHYSICAL REVIEW LETTERS (2004)
The Bloom's syndrome helicase suppresses crossing over during homologous recombination
L Wu et al.
NATURE (2003)
Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
G Charvin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Structural transitions and elasticity from torque measurements on DNA
Z Bryant et al.
NATURE (2003)
Thermophilic topoisomerase I on a single DNA molecule
NH Dekker et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA
K Perry et al.
STRUCTURE (2003)
The Bloom's syndrome helicase stimulates the activity of human topoisomerase IIIα
L Wu et al.
NUCLEIC ACIDS RESEARCH (2002)
The mechanism of type IA topoisomerases
NH Dekker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
An automated two-dimensional optical force clamp for single molecule studies
MJ Lang et al.
BIOPHYSICAL JOURNAL (2002)
Magnetic tweezers: Micromanipulation and force measurement at the molecular level
C Gosse et al.
BIOPHYSICAL JOURNAL (2002)
Crystal structure of reverse gyrase:: insights into the positive supercoiling of DNA
AC Rodríguez et al.
EMBO JOURNAL (2002)
Hyperthermophilic topoisomerase I from Thermotoga maritima.: A very efficient enzyme that functions independently of zinc binding.
T Viard et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
A novel bipartite mode of binding of M-smegmatis topoisomerase I to its recognition sequence
D Sikder et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Topological challenges to DNA replication: Conformations at the fork
L Postow et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule
A Changela et al.
NATURE (2001)
Mice lacking DNA topoisomerase IIIβ develop to maturity but show a reduced mean lifespan
KY Kwan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Structural transitions in DNA driven by external force and torque -: art. no. 051903
A Sarkar et al.
PHYSICAL REVIEW E (2001)
The mechanism of type IA topoisomerase-mediated DNA topological transformations
ZY Li et al.
MOLECULAR CELL (2001)
C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily
NV Grishin
JOURNAL OF MOLECULAR BIOLOGY (2000)
Single-molecule analysis of DNA uncoiling by a type II topoisomerase
TR Strick et al.
NATURE (2000)
Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli
EL Zechiedrich et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change
CX Zhu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Identification of a unique domain essential for Escherichia coli DNA topoisomerase III-catalysed decatenation of replication intermediates
ZY Li et al.
MOLECULAR MICROBIOLOGY (2000)