4.7 Article

Incorporating mitogenome sequencing into integrative taxonomy: The multidisciplinary redescription of the ciliate Thuricola similis (Peritrichia, Vaginicolidae) provides new insights into the evolutionary relationships among Oligohymenophorea subclasses

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics

Chuan-Qi Jiang et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Genetics & Heredity

The mitochondrial genome of the ciliate Pseudourostyla cristata (Ciliophora, Urostylida)

Kyung-Min Park et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

Article Genetics & Heredity

Phenotypic and mtDNA variation in Philippine Kappaphycus cottonii (Gigartinales, Rhodophyta)

Richard V. Dumilag et al.

MITOCHONDRIAL DNA PART A (2018)

Article Genetics & Heredity

Mitochondrial genome sequencing and analysis of scuticociliates (Uronema marinum) isolated from Takifugu rubripes

Ruijun Li et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2018)

Article Microbiology

Molecules illuminate morphology: phylogenomics confirms convergent evolution among 'oligotrichous' ciliates

Denis H. Lynn et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic

Eleni Gentekaki et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)

Article Microbiology

Protists as bioindicators in activated sludge: Identification, ecology and future needs

Wilhelm Foissner

EUROPEAN JOURNAL OF PROTISTOLOGY (2016)

Article Genetics & Heredity

Seven genes of mitochondrial genome enabling differentiation of honeybee subspecies Apis mellifera

R. A. Ilyasov et al.

RUSSIAN JOURNAL OF GENETICS (2016)

Article Microbiology

Molecular Phylogeny of Mobilid and Sessilid Ciliates Symbiotic in Eastern Pacific Limpets (Mollusca: Patellogastropoda)

Nicholas A. T. Irwin et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea

Jin-Mei Feng et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Molecular Diversity of Eukaryotes in Municipal Wastewater Treatment Processes as Revealed by 18S rRNA Gene Analysis

Kengo Matsunaga et al.

MICROBES AND ENVIRONMENTS (2014)

Article Microbiology

Protargol Synthesis: An In-house Protocol

Xuming Pan et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Evolutionary Biology

The Oxytricha trifallax Mitochondrial Genome

Estienne C. Swart et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Letter Biochemical Research Methods

jModelTest 2: more models, new heuristics and parallel computing

Diego Darriba et al.

NATURE METHODS (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Biodiversity Conservation

Diversity and endemism of ciliates inhabiting Neotropical phytotelmata

Micah Dunthorn et al.

SYSTEMATICS AND BIODIVERSITY (2012)

Article Biochemical Research Methods

ProtTest 3: fast selection of best-fit models of protein evolution

Diego Darriba et al.

BIOINFORMATICS (2011)

Review Zoology

Protozoa in wastewater treatment processes: A minireview

P. Madoni

ITALIAN JOURNAL OF ZOOLOGY (2011)

Article Marine & Freshwater Biology

Two new ectoparasitic ciliates, Sphenophrya solinis sp nov and Planeticovorticella paradoxa sp nov (Protozoa: Ciliophora), from marine molluscs

Kuidong Xu et al.

JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM (2011)

Article Biochemistry & Molecular Biology

The Organellar Genome and Metabolic Potential of the Hydrogen-Producing Mitochondrion of Nyctotherus ovalis

Rob M. de Graaf et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biotechnology & Applied Microbiology

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

Rob M. de Graaf et al.

BMC GENOMICS (2009)

Article Microbiology

Barcoding ciliates:: a comprehensive study of 75 isolates of the genus Tetrahymena

Chitchai Chantangsi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Review Microbiology

Trends in the use of protozoa in the assessment of wastewater treatment

A Nicolau et al.

RESEARCH IN MICROBIOLOGY (2001)

Article Biochemistry & Molecular Biology

Phylogenetic relationships of the genus Paramecium inferred from small subunit rRNA gene sequences

MC Struder-Kypke et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2000)