Related references
Note: Only part of the references are listed.Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems
Shuo Jiao et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Interaction and assembly processes of abundant and rare microbial communities during a diatom bloom process
Huajun Zhang et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship
Jiwen Liu et al.
ISME JOURNAL (2020)
Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments
William D. Orsi et al.
NATURE MICROBIOLOGY (2020)
Contrasting bacterial and archaeal distributions reflecting different geochemical processes in a sediment core from the Pearl River Estuary
Wenxiu Wang et al.
AMB EXPRESS (2020)
Understanding the evolution of interspecies interactions in microbial communities
Florien A. Gorter et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Sean K. Bay et al.
MSYSTEMS (2020)
Global diversity of microbial communities in marine sediment
Tatsuhiko Hoshino et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor
Aurele Vuillemin et al.
MBIO (2020)
Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay
Aurele Vuillemin et al.
FEMS MICROBIOLOGY ECOLOGY (2020)
Impact of Terrestrial Input on Deep-Sea Benthic Archaeal Community Structure in South China Sea Sediments
Dengxun Lai et al.
FRONTIERS IN MICROBIOLOGY (2020)
Microbial diversity of sediments from an inactive hydrothermal vent field, Southwest Indian Ridge
Zhifeng Yang et al.
MARINE LIFE SCIENCE & TECHNOLOGY (2020)
Abundance and distribution of Archaea in the subseafloor sedimentary biosphere
Tatsuhiko Hoshino et al.
ISME JOURNAL (2019)
Microbial diversity of two cold seep systems in gas hydrate-bearing sediments in the South China Sea
Hongpeng Cui et al.
MARINE ENVIRONMENTAL RESEARCH (2019)
Complex Microbial Communities Drive Iron and Sulfur Cycling in Arctic Fjord Sediments
J. Buongiorno et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
Decoupling species richness variation and spatial turnover in beta diversity across a fragmented landscape
Guang Hu et al.
PEERJ (2019)
Strengthening Insights in Microbial Ecological Networks from Theory to Applications
Xiaofei Lv et al.
MSYSTEMS (2019)
Archaea dominate oxic subseafloor communities over multimillion-year time scales
Aurele Vuillemin et al.
SCIENCE ADVANCES (2019)
Subseafloor life and its biogeochemical impacts
Steven D'Hondt et al.
NATURE COMMUNICATIONS (2019)
Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sediments
Hanna Sinkko et al.
SCIENTIFIC REPORTS (2019)
Soil Microbial Networks Shift Across a High-Elevation Successional Gradient
Emily C. Farrer et al.
FRONTIERS IN MICROBIOLOGY (2019)
Microbial assembly, interaction, functioning, activity and diversification: a review derived from community compositional data
Jiwen Liu et al.
MARINE LIFE SCIENCE & TECHNOLOGY (2019)
A meta-analysis of nestedness and turnover components of beta diversity across organisms and ecosystems
Janne Soininen et al.
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2018)
Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes
Yuanyuan Mo et al.
ISME JOURNAL (2018)
Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom
Yuanyuan Xue et al.
ISME JOURNAL (2018)
Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench
Takuro Nunoura et al.
MICROBES AND ENVIRONMENTS (2018)
Keystone taxa as drivers of microbiome structure and functioning
Samiran Banerjee et al.
NATURE REVIEWS MICROBIOLOGY (2018)
β-Diversity, Community Assembly, and Ecosystem Functioning
Akira S. Mori et al.
TRENDS IN ECOLOGY & EVOLUTION (2018)
Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas
Yanlu Qiao et al.
FRONTIERS IN MICROBIOLOGY (2018)
Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea
Michael F. Graw et al.
FRONTIERS IN MICROBIOLOGY (2018)
Clustering Coefficients for Correlation Networks
Naoki Masuda et al.
FRONTIERS IN NEUROINFORMATICS (2018)
From hairballs to hypotheses-biological insights from microbial networks
Lisa Rottjers et al.
FEMS MICROBIOLOGY REVIEWS (2018)
Microbial community composition along a 50 000-year lacustrine sediment sequence
Aurele Vuillemin et al.
FEMS MICROBIOLOGY ECOLOGY (2018)
Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean
Wenxue Wu et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Where less may be more: how the rare biosphere pulls ecosystems strings
Alexandre Jousset et al.
ISME JOURNAL (2017)
Early diagenesis and authigenic mineral formation in mobile muds of the Changjiang Estuary and adjacent shelf
Bin Zhao et al.
JOURNAL OF MARINE SYSTEMS (2017)
Microbial community assembly and evolution in subseafloor sediment
Piotr Starnawski et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Spatiotemporal variations of deep-sea sediment components and their fluxes since the last glaciation in the northern South China Sea
ShaoHua Zhao et al.
SCIENCE CHINA-EARTH SCIENCES (2017)
Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia
Aurele Vuillemin et al.
FRONTIERS IN MICROBIOLOGY (2017)
Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment
Christian Wurzbacher et al.
MICROBIOME (2017)
Microbial community assembly in marine sediments
Caitlin Petro et al.
AQUATIC MICROBIAL ECOLOGY (2017)
Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan
Takuro Nunoura et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
Alma E. Parada et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Bacterial diversity and community composition from seasurface to subseafloor
Emily A. Walsh et al.
ISME JOURNAL (2016)
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
William Walters et al.
MSYSTEMS (2016)
Determination of phosphorus in natural waters: A historical review
Paul Worsfold et al.
ANALYTICA CHIMICA ACTA (2016)
Slow Microbial Life in the Seabed
Bo Barker Jorgensen et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 8 (2016)
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
Shengjing Shi et al.
ECOLOGY LETTERS (2016)
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
Bin Ma et al.
ISME JOURNAL (2016)
Draft genome of an Aerophobetes bacterium reveals a facultative lifestyle in deep-sea anaerobic sediments
Yong Wang et al.
SCIENCE BULLETIN (2016)
Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments
Y. He et al.
NATURE MICROBIOLOGY (2016)
Denitrification, Anammox, and N2 Production in Marine Sediments
Allan H. Devol
ANNUAL REVIEW OF MARINE SCIENCE, VOL 7 (2015)
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
Amy Apprill et al.
AQUATIC MICROBIAL ECOLOGY (2015)
Ecology and exploration of the rare biosphere
Michael D. J. Lynch et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Exploring deep microbial life in coal-bearing sediment down to ∼2.5 km below the ocean floor
F. Inagaki et al.
SCIENCE (2015)
Temporal patterns of rarity provide a more complete view of microbial diversity
Ashley Shade et al.
TRENDS IN MICROBIOLOGY (2015)
Microbial diversity in the hydrate-containing and -free surface sediments in the Shenhu area, South China
Lu Jiao et al.
GEOSCIENCE FRONTIERS (2015)
Revealing Beta-Diversity Patterns of Breeding Bird and Lizard Communities on Inundated Land-Bridge Islands by Separating the Turnover and Nestedness Components
Xingfeng Si et al.
PLOS ONE (2015)
BAT - Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity
Pedro Cardoso et al.
METHODS IN ECOLOGY AND EVOLUTION (2015)
Life under extreme energy limitation: a synthesis of laboratory- and field-based investigations
Mark A. Lever et al.
FEMS MICROBIOLOGY REVIEWS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Remineralization of sedimentary organic carbon in mud deposits of the Changjiang Estuary and adjacent shelf: Implications for carbon preservation and authigenic mineral formation
Peng Yao et al.
CONTINENTAL SHELF RESEARCH (2014)
Patterns of Rare and Abundant Marine Microbial Eukaryotes
Ramiro Logares et al.
CURRENT BIOLOGY (2014)
Interpreting the replacement and richness difference components of beta diversity
Pierre Legendre
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2014)
Spatial distribution patterns of benthic microbial communities along the Pearl Estuary, China
Jiwen Liu et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2014)
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
Ashley Shade et al.
MBIO (2014)
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
David Berry et al.
FRONTIERS IN MICROBIOLOGY (2014)
Network topology reveals high connectance levels and few key microbial genera within soils
Manoeli Lupatini et al.
FRONTIERS IN ENVIRONMENTAL SCIENCE (2014)
Environment-Dependent Distribution of the Sediment nifH-Harboring Microbiota in the Northern South China Sea
Hongyue Dang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Loss in microbial diversity affects nitrogen cycling in soil
Laurent Philippot et al.
ISME JOURNAL (2013)
Microbial minorities modulate methane consumption through niche partitioning
Paul L. E. Bodelier et al.
ISME JOURNAL (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
Spatial Variations in Microbial Community Composition in Surface Seawater from the Ultra-Oligotrophic Center to Rim of the South Pacific Gyre
Qi Yin et al.
PLOS ONE (2013)
Energy, ecology and the distribution of microbial life
Jennifer L. Macalady et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Patterns and drivers of bacterial α- and β-diversity across vertical profiles from surface to subsurface sediments
Gian Marco Luna et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)
The Rare Bacterial Biosphere
Carlos Pedros-Alio
ANNUAL REVIEW OF MARINE SCIENCE, VOL 4 (2012)
Global distribution of microbial abundance and biomass in subseafloor sediment
Jens Kallmeyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Microbial seed banks: the ecological and evolutionary implications of dormancy
Jay T. Lennon et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Microbial Ecology of the Dark Ocean above, at, and below the Seafloor
Beth N. Orcutt et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems
Lucie Zinger et al.
PLOS ONE (2011)
Degradation of dissolved organic monomers and short-chain fatty acids in sandy marine sediment by fermentation and sulfate reduction
Thomas Valdemarsen et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2010)
Partitioning the turnover and nestedness components of beta diversity
Andres Baselga
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2010)
Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean
Regina Schauer et al.
ISME JOURNAL (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts
Olivia U. Mason et al.
ISME JOURNAL (2009)
Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands
Simone I. Boeer et al.
ISME JOURNAL (2009)
Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium
Harold D. May et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton
Achim Quaiser et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
Detrital fine-grained sediment contribution from Taiwan to the northern South China Sea and its relation to regional ocean circulation
Zhifei Liu et al.
MARINE GEOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Microbial diversity in the deep marine sediments from the Qiongdongnan Basin in South China Sea
Hongchen Jiang et al.
GEOMICROBIOLOGY JOURNAL (2007)
Microbial diversity in the deep sea and the underexplored rare biosphere
Mitchell L. Sogin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA
Hinsby Cadillo-Quiroz et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Microbial biogeography:: putting microorganisms on the map
JBH Martiny et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Rhizon sampling of porewaters near the sediment-water interface of aquatic systems
J Seeberg-Elverfeldt et al.
LIMNOLOGY AND OCEANOGRAPHY-METHODS (2005)
Distributions of microbial activities in deep subseafloor sediments
S D'Hondt et al.
SCIENCE (2004)
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
F Inagaki et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Provenance of a prominent sediment drift on the northern slope of the South China Sea
L Shao et al.
SCIENCE IN CHINA SERIES D-EARTH SCIENCES (2001)
Recent studies on bacterial populations and processes in subseafloor sediments: A review
RJ Parkes et al.
HYDROGEOLOGY JOURNAL (2000)
Share Paper
