Related references
Note: Only part of the references are listed.Structure of 3′-PO4/5′-OH RNA ligase RtcB in complex with a 5′-OH oligonucleotide
Ankan Banerjee et al.
RNA (2021)
DALI and the persistence of protein shape
Liisa Holm
PROTEIN SCIENCE (2020)
tRNA introns: Presence, processing, and purpose
Casey A. Schmidt et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2020)
Using metadynamics to explore complex free-energy landscapes
Giovanni Bussi et al.
NATURE REVIEWS PHYSICS (2020)
Evolutionary adaptations that enable enzymes to tolerate oxidative stress
James A. Imlay et al.
FREE RADICAL BIOLOGY AND MEDICINE (2019)
Holo-like and Druggable Protein Conformations from Enhanced Sampling of Binding Pocket Volume and Shape
Andrea Basciu et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)
Assessment of GAFF2 and OPLS-AA General Force Fields in Combination with the Water Models TIP3P, SPCE, and OPC3 for the Solvation Free Energy of Druglike Organic Molecules
Dario Vassetti et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2019)
The EMBL-EBI search and sequence analysis tools APIs in 2019
Fabio Madeira et al.
NUCLEIC ACIDS RESEARCH (2019)
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Dorothee Liebschner et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)
Clinical, histological, and genetic characterization of PYROXD1-related myopathy
Xaviere Lornage et al.
ACTA NEUROPATHOLOGICA COMMUNICATIONS (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
Emerging roles of ER stress and unfolded protein response pathways in skeletal muscle health and disease
Kyle R. Bohnert et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2018)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
MolProbity: More and better reference data for improved all-atom structure validation
Christopher J. Williams et al.
PROTEIN SCIENCE (2018)
NAD(H) and NADP(H) Redox Couples and Cellular Energy Metabolism
Wusheng Xiao et al.
ANTIOXIDANTS & REDOX SIGNALING (2018)
SWISS-MODEL: homology modelling of protein structures and complexes
Andrew Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2018)
The unfolded protein response and endoplasmic reticulum protein targeting machineries converge on the stress sensor IRE1
Diego Acosta-Alvear et al.
ELIFE (2018)
The SWISS-MODEL Repository-new features and functionality
Stefan Bienert et al.
NUCLEIC ACIDS RESEARCH (2017)
Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP
Tasos Gogakos et al.
CELL REPORTS (2017)
Variants in the Oxidoreductase PYROXD1 Cause Early-Onset Myopathy with Internalized Nuclei and Myofibrillar Disorganization
Gina L. O'Grady et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2016)
Understanding the challenges of protein flexibility in drug design
Dinler A. Antunes et al.
EXPERT OPINION ON DRUG DISCOVERY (2015)
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James A. Maier et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
tRNA processing, modification, and subcellular dynamics: past, present, and future
Eric M. Phizicky et al.
RNA (2015)
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants
Andrea Mair et al.
ELIFE (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A Mass-Spectrometry-Based Framework To Define the Extent of Disorder in Proteins
Rebecca Beveridge et al.
ANALYTICAL CHEMISTRY (2014)
Structural Insights into the Coenzyme Mediated Monomer-Dimer Transition of the Pro-Apoptotic Apoptosis Inducing Factor
Patricia Ferreira et al.
BIOCHEMISTRY (2014)
PLUMED 2: New feathers for an old bird
Gareth A. Tribello et al.
COMPUTER PHYSICS COMMUNICATIONS (2014)
The mammalian tRNA ligase complex mediates splicing of XBP1 mRNA and controls antibody secretion in plasma cells
Jennifer Jurkin et al.
EMBO JOURNAL (2014)
The RtcB RNA ligase is an essential component of the metazoan unfolded protein response
Sara Guckian Kosmaczewski et al.
EMBO REPORTS (2014)
A Synthetic Biology Approach Identifies the Mammalian UPR RNA Ligase RtcB
Yanyan Lu et al.
MOLECULAR CELL (2014)
Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors
Johannes Popow et al.
NATURE (2014)
Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation
Kevin K. Desai et al.
BIOCHEMISTRY (2013)
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
Sander Pronk et al.
BIOINFORMATICS (2013)
CLP1 links tRNA metabolism to progressive motor-neuron loss
Toshikatsu Hanada et al.
NATURE (2013)
An Optimized microRNA Backbone for Effective Single-Copy RNAi
Christof Fellmann et al.
CELL REPORTS (2013)
Hidden Relationship between Conserved Residues and Locally Conserved Phosphate-Binding Structures in NAD(P)-Binding Proteins
Chih Yuan Wu et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
A pipeline for the generation of shRNA transgenic mice
Lukas E. Dow et al.
NATURE PROTOCOLS (2012)
The unfolded protein response: controlling cell fate decisions under ER stress and beyond
Claudio Hetz
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)
Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3′-terminal phosphate and 5′-OH
Markus Englert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions
Mats H. M. Olsson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi
Johannes Zuber et al.
NATURE BIOTECHNOLOGY (2011)
HSPC117 Is the Essential Subunit of a Human tRNA Splicing Ligase Complex
Johannes Popow et al.
SCIENCE (2011)
The Unfolded Protein Response: From Stress Pathway to Homeostatic Regulation
Peter Walter et al.
SCIENCE (2011)
Spliceosome Structure and Function
Cindy L. Will et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
XDS
Wolfgang Kabsch
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
The REM phase of gene regulation
Matthias W. Hentze et al.
TRENDS IN BIOCHEMICAL SCIENCES (2010)
Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective
Nicolas Guex et al.
ELECTROPHORESIS (2009)
Empirical Scoring Functions for Advanced Protein-Ligand Docking with PLANTS
Oliver Korb et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)
The role of dynamic conformational ensembles in biomolecular recognition
David D. Boehr et al.
NATURE CHEMICAL BIOLOGY (2009)
Profiling protein thiol oxidation in tumor cells using sulfenic acid-specific antibodies
Young Ho Seo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
IRE1 signaling affects cell fate during the unfolded protein response
Jonathan H. Lin et al.
SCIENCE (2007)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
Todd J. Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2007)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
TJ Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2004)
Open source clustering software
MJL de Hoon et al.
BIOINFORMATICS (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor
H Yoshida et al.
CELL (2001)
Modeling of loops in protein structures
A Fiser et al.
PROTEIN SCIENCE (2000)
High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP
CI Rodríguez et al.
NATURE GENETICS (2000)
Share Paper
