Related references
Note: Only part of the references are listed.The separation sciences, the front end to proteomics: An historical perspective
Edouard C. Nice
BIOMEDICAL CHROMATOGRAPHY (2021)
Mass spectrometry-based protein identification in proteomics-a review
Zainab Noor et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Data-Independent Acquisition Mass Spectrometry-Based Proteomics and Software Tools: A Glimpse in 2020
Fangfei Zhang et al.
PROTEOMICS (2020)
Isolation Window Optimization of Data-Independent Acquisition Using Predicted Libraries for Deep and Accurate Proteome Profiling
Joerg Doellinger et al.
ANALYTICAL CHEMISTRY (2020)
A high-stringency blueprint of the human proteome
Subash Adhikari et al.
NATURE COMMUNICATIONS (2020)
Glycoproteomic Analysis Reveals Aberrant Expression of Complement C9 and Fibronectin in the Plasma of Patients with Colorectal Cancer
Juthamard Chantaraamporn et al.
PROTEOMES (2020)
In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry
Subash Adhikari et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
Siegfried Gessulat et al.
NATURE METHODS (2019)
A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer
Qiujin Shen et al.
EBIOMEDICINE (2019)
Multiplex plasma protein profiling identifies novel markers to discriminate patients with adenocarcinoma of the lung
Dijana Djureinovic et al.
BMC CANCER (2019)
Addressing the Challenges of High-Throughput Cancer Tissue Proteomics for Clinical Application: ProCan
Brett Tully et al.
PROTEOMICS (2019)
Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer
Seong Beom Ahn et al.
PROTEOMICS (2019)
Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel
Seong Beom Ahn et al.
CLINICAL PROTEOMICS (2019)
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
David J. Clark et al.
CELL (2019)
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0
Eric W. Deutsch et al.
JOURNAL OF PROTEOME RESEARCH (2019)
High Clinical Value of Liquid Biopsy to Detect Circulating Tumor Cells and Tumor Exosomes in Pancreatic Ductal Adenocarcinoma Patients Eligible for Up-Front Surgery
Etienne Buscail et al.
CANCERS (2019)
β6-integrin serves as a novel serum tumor marker for colorectal carcinoma
Susan Bengs et al.
INTERNATIONAL JOURNAL OF CANCER (2019)
Absolute Quantification of All Identified Plasma Proteins from SWATH Data for Biomarker Discovery
Shawn J. Rice et al.
PROTEOMICS (2019)
iTRAQ-based Comparative Serum Proteomic Analysis of Prostate Cancer Patients with or without Bone Metastasis
Bo Yan et al.
JOURNAL OF CANCER (2019)
Suitability assessment of baseline concentration of MMP3, TIMP3, HE4 and CA125 in the serum of patients with ovarian cancer
Aneta Cymbaluk-Ploska et al.
JOURNAL OF OVARIAN RESEARCH (2018)
Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra
Jianqiao Shen et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial
Christina Ludwig et al.
MOLECULAR SYSTEMS BIOLOGY (2018)
Sample preparation for detection of low abundance proteins in human plasma using ultra-high performance liquid chromatography coupled with highly accurate mass spectrometry
Yunseo Seong et al.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2017)
The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays
Jochen M. Schwenk et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Revisiting biomarker discovery by plasma proteomics
Philipp E. Geyer et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS
George Rosenberger et al.
NATURE BIOTECHNOLOGY (2017)
Comparison of fractionation proteomics for local SWATH library building
Elisabeth Govaert et al.
PROTEOMICS (2017)
Improving Protein Detection Confidence Using SWATH-Mass Spectrometry with Large Peptide Reference Libraries
Jemma X. Wu et al.
PROTEOMICS (2017)
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Ben C. Collins et al.
NATURE COMMUNICATIONS (2017)
Evaluation of serum epidermal growth factor receptor (EGFR) in correlation to circulating tumor cells in patients with metastatic breast cancer
Malgorzata Banys-Paluchowski et al.
SCIENTIFIC REPORTS (2017)
Biomarkers of inflammation and breast cancer risk: a case-control study nested in the EPIC-Varese cohort
Claudia Agnoli et al.
SCIENTIFIC REPORTS (2017)
Evaluation of two high-throughput proteomic technologies for plasma biomarker discovery in immunotherapy-treated melanoma patients
Su Yin Lim et al.
BIOMARKER RESEARCH (2017)
The neXtProt peptide uniqueness checker: a tool for the proteomics community
Mathieu Schaeffer et al.
BIOINFORMATICS (2017)
Social network architecture of human immune cells unveiled by quantitative proteomics
Jan C. Rieckmann et al.
NATURE IMMUNOLOGY (2017)
Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study
S. E. T. Larkin et al.
BRITISH JOURNAL OF CANCER (2016)
The Serum Concentrations of Chemokine CXCL12 and Its Specific Receptor CXCR4 in Patients with Esophageal Cancer
Marta Lukaszewicz-Zajac et al.
DISEASE MARKERS (2016)
Construction and analysis of protein-protein interaction networks based on proteomics data of prostate cancer
Chen Chen et al.
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE (2016)
SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries
Jemma X. Wu et al.
MOLECULAR & CELLULAR PROTEOMICS (2016)
Robust Label-free, Quantitative Profiling of Circulating Plasma Microparticle (MP) Associated Proteins
Sophie Braga-Lagache et al.
MOLECULAR & CELLULAR PROTEOMICS (2016)
Proteomics reveals the effects of sustained weight loss on the human plasma proteome
Philipp E. Geyer et al.
MOLECULAR SYSTEMS BIOLOGY (2016)
A multicenter study benchmarks software tools for label-free proteome quantification
Pedro Navarro et al.
NATURE BIOTECHNOLOGY (2016)
Plasma levels and diagnostic utility of VEGF, MMP-9, and TIMP-1 in the diagnosis of patients with breast cancer
Slawomir Lawicki et al.
ONCOTARGETS AND THERAPY (2016)
Plasma glutamate carboxypeptidase is a negative regulator in liver cancer metastasis
Jae-Hye Lee et al.
ONCOTARGET (2016)
Plasma Proteome Profiling to Assess Human Health and Disease
Philipp E. Geyer et al.
CELL SYSTEMS (2016)
Altered levels of plasma chemokines in breast cancer and their association with clinical and pathological characteristics
D. Narita et al.
NEOPLASMA (2016)
The CPTAC Data Portal: A Resource for Cancer Proteomics Research
Nathan J. Edwards et al.
JOURNAL OF PROTEOME RESEARCH (2015)
Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury
Hasmik Keshishian et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Building high-quality assay libraries for targeted analysis of SWATH MS data
Olga T. Schubert et al.
NATURE PROTOCOLS (2015)
Epithelial and Stromal Cell Urokinase Plasminogen Activator Receptor Expression Differentially Correlates with Survival in Rectal Cancer Stages B and C Patients
Seong Beom Ahn et al.
PLOS ONE (2015)
Serum Calprotectin, CD26 and EGF to Establish a Panel for the Diagnosis of Lung Cancer
Sonia Blanco-Prieto et al.
PLOS ONE (2015)
A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers
Sadia Mahboob et al.
CLINICAL PROTEOMICS (2015)
Upregulation of TLRs and IL-6 as a Marker in Human Colorectal Cancer
Chien-Chang Lu et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)
Expansion of the Ion Library for Mining SWATH-MS Data through Fractionation Proteomics
Jin Zi et al.
ANALYTICAL CHEMISTRY (2014)
Characterization of the Interaction between Heterodimeric αvβ6 Integrin and Urokinase Plasminogen Activator Receptor (uPAR) Using Functional Proteomics
Seong Beom Ahn et al.
JOURNAL OF PROTEOME RESEARCH (2014)
Discovery of Colorectal Cancer Biomarker Candidates by Membrane Proteomic Analysis and Subsequent Verification using Selected Reaction Monitoring (SRM) and Tissue Microarray (TMA) Analysis
Hideaki Kume et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
In-depth Characterization of the Cerebrospinal Fluid (CSF) Proteome Displayed Through the CSF Proteome Resource (CSF-PR)
Astrid Guldbrandsen et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Plasma Proteome Database as a resource for proteomics research: 2014 update
Vishalakshi Nanjappa et al.
NUCLEIC ACIDS RESEARCH (2014)
Correlations between Integrin ανβ6 Expression and Clinico-Pathological Features in Stage B and Stage C Rectal Cancer
Seong Beom Ahn et al.
PLOS ONE (2014)
Exploring the Human Plasma Proteome for Humoral Mediators of Remote Ischemic Preconditioning - A Word of Caution
Erik Helgeland et al.
PLOS ONE (2014)
A repository of assays to quantify 10,000 human proteins by SWATH-MS
George Rosenberger et al.
SCIENTIFIC DATA (2014)
Human blood plasma proteome mapping for search of potential markers of the lung squamous cell carcinoma
Valeriy E. Shevchenko et al.
EUROPEAN JOURNAL OF MASS SPECTROMETRY (2013)
Interleukin-8 in Breast Cancer Progression
Natasa Todorovic-Rakovic et al.
JOURNAL OF INTERFERON AND CYTOKINE RESEARCH (2013)
Plasma Low-Molecular-Weight Proteome Profiling Identified Neuropeptide-Y as a Prostate Cancer Biomarker Polypeptide
Koji Ueda et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Exploratory investigation of eight circulating plasma markers in brain tumor patients
Aysegul Ilhan-Mutlu et al.
NEUROSURGICAL REVIEW (2013)
Identification of Five Serum Protein Markers for Detection of Ovarian Cancer by Antibody Arrays
Weidong Jiang et al.
PLOS ONE (2013)
Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes
Rui Chen et al.
CELL (2012)
Beta 1 integrin predicts survival in breast cancer: a clinicopathological and immunohistochemical study
Petra Barros dos Santos et al.
DIAGNOSTIC PATHOLOGY (2012)
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
Ludovic C. Gillet et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Label-free MSE proteomic analysis of chronic myeloid leukemia bone marrow plasma: disclosing new insights from therapy resistance
Luciana Pizzatti et al.
PROTEOMICS (2012)
Salivary and serum interleukin 1 beta, interleukin 6 and tumor necrosis factor alpha in patients with leukoplakia and oral cancer
Vlaho Brailo et al.
MEDICINA ORAL PATOLOGIA ORAL Y CIRUGIA BUCAL (2012)
Tumor markers in prostate cancer I: Blood-based markers
Shahrokh F. Shariat et al.
ACTA ONCOLOGICA (2011)
Role of serum matrix metalloproteinase-2 and-9 to predict breast cancer progression
Suprava Patel et al.
CLINICAL BIOCHEMISTRY (2011)
Plasma Markers for Identifying Patients with Metastatic Melanoma
Harriet M. Kluger et al.
CLINICAL CANCER RESEARCH (2011)
Clinical significance of serum levels of matrix metalloproteinase 2 (MMP-2) and its tissue inhibitor (TIMP-2) in gastric cancer
Barbara Mroczko et al.
FOLIA HISTOCHEMICA ET CYTOBIOLOGICA (2011)
Soluble urokinase plasminogen activator receptor as a prognostic marker in men participating in prostate cancer screening
A. Kjellman et al.
JOURNAL OF INTERNAL MEDICINE (2011)
Matrix metalloproteinase-2 (MMP-2) and -9 (MMP-9) in preoperative serum as independent prognostic markers in patients with colorectal cancer
Vesna V. Dragutinovic et al.
MOLECULAR AND CELLULAR BIOCHEMISTRY (2011)
mProphet: automated data processing and statistical validation for large-scale SRM experiments
Lukas Reiter et al.
NATURE METHODS (2011)
A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery
Amit Kumar Yadav et al.
PLOS ONE (2011)
Cystatin C - A Fast and Reliable Biomarker for Glomerular Filtration Rate in Head and Neck Cancer Patients
Edwin Boelke et al.
STRAHLENTHERAPIE UND ONKOLOGIE (2011)
Toward Standardized High-Throughput Serum Diagnostics: Multiplex-Protein Array Identifies IL-8 and VEGF as Serum Markers for Colon Cancer
Stefanie Buenger et al.
JOURNAL OF BIOMOLECULAR SCREENING (2011)
Prognostic value of intact and cleaved forms of the urokinase plasminogen activator receptor in a retrospective study of 518 colorectal cancer patients
Anne Fog Lomholt et al.
ACTA ONCOLOGICA (2010)
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
Brendan MacLean et al.
BIOINFORMATICS (2010)
Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics
Chengjian Tu et al.
JOURNAL OF PROTEOME RESEARCH (2010)
A centrifugal ultrafiltration strategy for isolating the low-molecular weight (≤25 K) component of human plasma proteome
David W. Greening et al.
JOURNAL OF PROTEOMICS (2010)
Prognostic significance of urokinase plasminogen activator receptor and its cleaved forms in blood from patients with non-small cell lung cancer
Charlotte Elberling Almasi et al.
APMIS (2009)
Use of multidimensional separation protocols for the purification of trace components in complex biological samples for proteomics analysis
E. C. Nice et al.
JOURNAL OF CHROMATOGRAPHY A (2007)
Complete loss of PTEN expression as a possible early prognostic marker for prostate cancer metastasis
Martine Schmitz et al.
INTERNATIONAL JOURNAL OF CANCER (2007)
Head-to-head comparison of serum fractionation techniques
Jeffrey R. Whiteaker et al.
JOURNAL OF PROTEOME RESEARCH (2007)
High dynamic range characterization of the trauma patient plasma proteome
Tao Liu et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
GS Omenn et al.
PROTEOMICS (2005)
The human plasma proteome - History, character, and diagnostic prospects
NL Anderson et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
αvβ6 integrin-A marker for the malignant potential of epithelial ovarian cancer
N Ahmed et al.
JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2002)
Plasma concentration of interleukin-6 and the risk of future myocardial infarction among apparently healthy men
PM Ridker et al.
CIRCULATION (2000)
Share Paper
