Related references
Note: Only part of the references are listed.A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation
Matthew G. Durrant et al.
CELL HOST & MICROBE (2020)
Phigaro: high-throughput prophage sequence annotation
Elizaveta V. Starikova et al.
BIOINFORMATICS (2020)
DNA Features Viewer: a sequence annotation formatting and plotting library for Python
Valentin Zulkower et al.
BIOINFORMATICS (2020)
Evolutionary Timeline and Genomic Plasticity Underlying the Lifestyle Diversity in Rhizobiales
Sishuo Wang et al.
MSYSTEMS (2020)
Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture
Abdoulaye Soumare et al.
PLANTS-BASEL (2020)
Interspecific conflict and the evolution of ineffective rhizobia
Kelsey A. Gano-Cohen et al.
ECOLOGY LETTERS (2019)
Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas
Ryan A. Melnyk et al.
ISME JOURNAL (2019)
The NifZ accessory protein has an equivalent function in maturation of both nitrogenase MoFe protein P-clusters
Emilio Jimenez-Vicente et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2019)
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
Pierre Barbera et al.
SYSTEMATIC BIOLOGY (2019)
Genome-informed Bradyrhizobium taxonomy: where to from here?
Juanita R. Avontuur et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2019)
A Genomotaxonomy View of the Bradyrhizobium Genus
Ernesto Ormeno-Orrillo et al.
FRONTIERS IN MICROBIOLOGY (2019)
Diazotrophic microbial community and abundance in acidic subtropical natural and re-vegetated forest soils revealed by high-throughput sequencing of nifH gene
Han Meng et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)
Stress-inducible NHEJ in bacteria: function in DNA repair and acquisition of heterologous DNA
Pierre Dupuy et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Multiple factors drive the abundance and diversity of the diazotrophic community in typical farmland soils of China
Li-Li Han et al.
FEMS MICROBIOLOGY ECOLOGY (2019)
Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia
Ruben Garrido-Oter et al.
CELL HOST & MICROBE (2018)
A global atlas of the dominant bacteria found in soil
Manuel Delgado-Baquerizo et al.
SCIENCE (2018)
Regulation of Nitrogen Fixation in Bradyrhizobium sp Strain DOA9 Involves Two Distinct NifA Regulatory Proteins That Are Functionally Redundant During Symbiosis but Not During Free-Living Growth
Jenjira Wongdee et al.
FRONTIERS IN MICROBIOLOGY (2018)
Specificity in Legume-Rhizobia Symbioses
Mitchell Andrews et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
Bradyrhizobium mercantei sp nov., a nitrogen-fixing symbiont isolated from nodules of Deguelia costata (syn. Lonchocarpus costatus)
Luisa Caroline Ferraz Helene et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
Seok-Hwan Yoon et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Nitrogen-fixing rhizobial strains isolated from Desmodium incanum DC in Argentina: Phylogeny, biodiversity and symbiotic ability
Maria Antonieta Toniutti et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2017)
The role of rhizobial (NifV) and plant (FEN1) homocitrate synthases in Aeschynomene/photosynthetic Bradyrhizobium symbiosis
Nico Nouwen et al.
SCIENTIFIC REPORTS (2017)
The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis
Rhesa N. Ledbetter et al.
BIOCHEMISTRY (2017)
Rhizobium-legume symbiosis in the absence of Nod factors: two possible scenarios with or without the T3SS
Shin Okazaki et al.
ISME JOURNAL (2016)
Epidemic Spread of Symbiotic and Non-Symbiotic Bradyrhizobium Genotypes Across California
A. C. Hollowell et al.
MICROBIAL ECOLOGY (2016)
Origin and Evolution of Nitrogen Fixation Genes on Symbiosis Islands and Plasmid in Bradyrhizobium
Takashi Okubo et al.
MICROBES AND ENVIRONMENTS (2016)
Global biogeography of microbial nitrogen-cycling traits in soil
Michaeline B. Nelson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The Floating (Pathogenicity) Island: A Genomic Dessert
Richard P. Novick et al.
TRENDS IN GENETICS (2016)
Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts
Philippe Remigi et al.
TRENDS IN MICROBIOLOGY (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils
David VanInsberghe et al.
ISME JOURNAL (2015)
Free-living nitrogen fixation responds to elevated nutrient inputs in tropical montane forest floor and canopy soils of southern Ecuador
Amanda L. Matson et al.
BIOGEOCHEMISTRY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
The Spread of Bradyrhizobium Lineages Across Host Legume Clades: from Abarema to Zygia
Matthew A. Parker
MICROBIAL ECOLOGY (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Biological nitrogen fixation in non-legume plants
Carole Santi et al.
ANNALS OF BOTANY (2013)
Relationships among phosphorus, molybdenum and free-living nitrogen fixation in tropical rain forests: results from observational and experimental analyses
Sasha C. Reed et al.
BIOGEOCHEMISTRY (2013)
Possible contribution of Bradyrhizobium on nitrogen fixation in sweet potatoes
Junko Terakado-Tonooka et al.
PLANT AND SOIL (2013)
Biological nitrogen fixation: rates, patterns and ecological controls in terrestrial ecosystems
Peter M. Vitousek et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Complete Genome Sequence of Bradyrhizobium sp S23321: Insights into Symbiosis Evolution in Soil Oligotrophs
Takashi Okubo et al.
MICROBES AND ENVIRONMENTS (2012)
Aligning short reads to reference alignments and trees
Simon A. Berger et al.
BIOINFORMATICS (2011)
A global census of nitrogenase diversity
John Christian Gaby et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
BioRuby: bioinformatics software for the Ruby programming language
Naohisa Goto et al.
BIOINFORMATICS (2010)
The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements
Mart Krupovic et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Detecting genomic islands using bioinformatics approaches
Morgan G. I. Langille et al.
NATURE REVIEWS MICROBIOLOGY (2010)
In Situ Phylogenetic Structure and Diversity of Wild Bradyrhizobium Communities
J. L. Sachs et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation
Tsuneo Hakoyama et al.
NATURE (2009)
H2O2 and •NO scavenging by Mycobacterium leprae truncated hemoglobin O
Paolo Ascenzi et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)
The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571
Kyung-Bum Lee et al.
BMC GENOMICS (2008)
Global inputs of biological nitrogen fixation in agricultural systems
David F. Herridge et al.
PLANT AND SOIL (2008)
Legumes symbioses:: Absence of Nod genes in photosynthetic bradyrhizobia
Eric Giraud et al.
SCIENCE (2007)
Pathogenicity islands: a molecular toolbox for bacterial virulence
Ohad Gal-Mor et al.
CELLULAR MICROBIOLOGY (2006)
Truncated hemoglobin o of Mycobacterium tuberculosis:: the oligomeric state change and the interaction with membrane components
C Liu et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)
The fixABCX genes in Rhodospirillum rubrum encode a putative membrane complex participating in electron transfer to nitrogenase
T Edgren et al.
JOURNAL OF BACTERIOLOGY (2004)
Genetic regulation of biological nitrogen fixation
R Dixon et al.
NATURE REVIEWS MICROBIOLOGY (2004)
Novel heat shock protein HspQ stimulates the degradation of mutant DnaA protein in Escherichia coli
T Shimuta et al.
GENES TO CELLS (2004)
A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli
FW Outten et al.
MOLECULAR MICROBIOLOGY (2004)
Isolation and identification of actinobacteria from surface-sterilized wheat roots
JT Coombs et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
T Kaneko et al.
DNA RESEARCH (2002)
Mycobacterium tuberculosis hemoglobin HbO associates with membranes and stimulates cellular respiration of recombinant Escherichia coli
R Pathania et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Share Paper
