4.4 Article

Listeria cossartiae sp. nov., Listeria immobilis sp. nov., Listeria portnoyi sp. nov. and Listeria rustica sp. nov., isolated from agricultural water and natural environments

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Pierre-Alain Chaumeil et al.

BIOINFORMATICS (2020)

Article Microbiology

Listeria valentina sp. nov., isolated from a water trough and the faeces of healthy sheep

Juan J. Quereda et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)

Article Microbiology

Listeria thailandensis sp. nov.

Alexandre Leclercq et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Biochemical Research Methods

Versatile genome assembly evaluation with QUAST-LG

Alla Mikheenko et al.

BIOINFORMATICS (2018)

Article Microbiology

Listeria costaricensis sp nov.

Kattia Nunez-Montero et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Microbiology

Listeria goaensis sp nov.

Swapnil P. Doijad et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Article Food Science & Technology

Tolerance to quaternary ammonium compound disinfectants may enhance growth of Listeria monocytogenes in the food industry

Trond Moretro et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Genetic Stability and Evolution of the sigB Allele, Used for Listeria Sensu Stricto Subtyping and Phylogenetic Inference

Jingqiu Liao et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Review Chemistry, Analytical

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

Leighton Pritchard et al.

ANALYTICAL METHODS (2016)

Review Biotechnology & Applied Microbiology

Characteristics and distribution of Listeria spp., including Listeria species newly described since 2009

Renato H. Orsi et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Microbiology

Listeria booriae sp nov and Listeria newyorkensis sp nov., from food processing environments in the USA

Daniel Weller et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Microbiology

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

Mincheol Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Kraken: ultrafast metagenomic sequence classification using exact alignments

Derrick E. Wood et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

Article Microbiology

Listeria fleischmannii sp nov., isolated from cheese

David Bertsch et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Microbiology

Listeria weihenstephanensis sp nov., isolated from the water plant Lemna trisulca taken from a freshwater pond

Evi Lang Halter et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Microbiology

Genome sequencing identifies Listeria fleischmannii subsp coloradonensis subsp nov., isolated from a ranch

Henk C. den Bakker et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Biochemical Research Methods

Exploiting sparseness in de novo genome assembly

Chengxi Ye et al.

BMC BIOINFORMATICS (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Microbiology

Listeria marthii sp nov., isolated from the natural environment, Finger Lakes National Forest

Lewis M. Graves et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)

Article Microbiology

Listeria rocourtiae sp. nov.

Alexandre Leclercq et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)

Review Microbiology

Notes on the characterization of prokaryote strains for taxonomic purposes

B. J. Tindall et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

NanoDrop Microvolume Quantitation of Nucleic Acids

Philippe Desjardins et al.

Jove-Journal of Visualized Experiments (2010)

Article Microbiology

A new perspective on Listeria monocytogenes evolution

Marie Ragon et al.

PLOS PATHOGENS (2008)

Article Biotechnology & Applied Microbiology

Comparative analysis of the sigma(B)-dependent stress responses in Listeria monocytogenes and Listeria innocua strains exposed to selected stress conditions

Sarita Raengpradub et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biochemical Research Methods

ProtTest: selection of best-fit models of protein evolution

F Abascal et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Microbiology

Differentiation of the major Listeria monocytogenes serovars by multiplex PCR

M Doumith et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2004)

Review Microbiology

Listeria pathogenesis and molecular virulence determinants

JA Vázquez-Boland et al.

CLINICAL MICROBIOLOGY REVIEWS (2001)