4.4 Article

Pseudomonas carbonaria sp. nov., isolated from charcoal

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Microbiology

Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia

Yuanyuan Zou et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Microbiology

Pseudomonas nosocomialis sp. nov., isolated from clinical specimens

Magdalena Mulet et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Microbiology

Pseudomonas mangiferae sp. nov., isolated from bark of mango tree in Thailand

Panjaporn Anurat et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Multidisciplinary Sciences

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Chirag Jain et al.

NATURE COMMUNICATIONS (2018)

Article Microbiology

Pseudomonas matsuisoli sp nova, isolated from a soil sample

Shih-Yao Lin et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

Yongchao Liu et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Analyzing genome coverage profiles with applications to quality control in metagenomics

Martin S. Lindner et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse et al.

BIOINFORMATICS (2012)

Article Microbiology

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

Ok-Sun Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

Pablo Yarza et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2008)

Article Microbiology

Pseudomonas knackmussii sp nov.

Andreas Stolz et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

ARB:: a software environment for sequence data

W Ludwig et al.

NUCLEIC ACIDS RESEARCH (2004)