Related references
Note: Only part of the references are listed.Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
Lucas Czech et al.
BIOINFORMATICS (2020)
Salinity and Time Can Alter Epibacterial Communities of an Invasive Seaweed
Mahasweta Saha et al.
FRONTIERS IN MICROBIOLOGY (2020)
PICRUSt2 for prediction of metagenome functions
Gavin M. Douglas et al.
NATURE BIOTECHNOLOGY (2020)
Bacteria and archaea on Earth and their abundance in biofilms
Hans-Curt Flemming et al.
NATURE REVIEWS MICROBIOLOGY (2019)
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
Pierre Barbera et al.
SYSTEMATIC BIOLOGY (2019)
Warming and CO2 Enhance Arctic Heterotrophic Microbial Activity
Dolors Vaque et al.
FRONTIERS IN MICROBIOLOGY (2019)
DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions
Lucie Zinger et al.
MOLECULAR ECOLOGY (2019)
Global change drives modern plankton communities away from the pre-industrial state
Lukas Jonkers et al.
NATURE (2019)
Short-term succession of marine microbial fouling communities and the identification of primary and secondary colonizers
Raeid M. M. Abed et al.
BIOFOULING (2019)
Scientists' warning to humanity: microorganisms and climate change
Ricardo Cavicchioli et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Experimental warming reduced topsoil carbon content and increased soil bacterial diversity in a subtropical planted forest
Hui Wang et al.
SOIL BIOLOGY & BIOCHEMISTRY (2019)
Methods for normalizing microbiome data: An ecological perspective
Donald T. McKnight et al.
METHODS IN ECOLOGY AND EVOLUTION (2019)
Actinobacteria: A relevant minority for the maintenance of gut homeostasis
Cecilia Binda et al.
DIGESTIVE AND LIVER DISEASE (2018)
Synergy between nutrients and warming enhances methane ebullition from experimental lakes
Thomas A. Davidson et al.
NATURE CLIMATE CHANGE (2018)
Evolving paradigms in biological carbon cycling in the ocean
Chuanlun Zhang et al.
NATIONAL SCIENCE REVIEW (2018)
Streams of data from drops of water: 21st century molecular microbial ecology
Dave R. Clark et al.
WILEY INTERDISCIPLINARY REVIEWS-WATER (2018)
A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota
Fernanda Cornejo-Granados et al.
PEERJ (2018)
Efficient comparative phylogenetics on large trees
Stilianos Louca et al.
BIOINFORMATICS (2018)
Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata
Sandra Godinho Silva et al.
GENOME ANNOUNCEMENTS (2018)
Effects of experimental warming on biodiversity depend on ecosystem type and local species composition
Daniel S. Gruner et al.
OIKOS (2017)
Cumulative effects of multiple stressors: An invasive oyster and nutrient enrichment reduce subsequent invasive barnacle recruitment
Siobhan R. Vye et al.
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2017)
Normalization and microbial differential abundance strategies depend upon data characteristics
Sophie Weiss et al.
MICROBIOME (2017)
Microorganisms and ocean global change
David A. Hutchins et al.
NATURE MICROBIOLOGY (2017)
The Variable Influence of Dispersant on Degradation of Oil Hydrocarbons in Subarctic Deep-Sea Sediments at Low Temperatures (0-5 °C)
Robert M. W. Ferguson et al.
SCIENTIFIC REPORTS (2017)
Interactive effects of warming, eutrophication and size structure: impacts on biodiversity and food-web structure
Amrei Binzer et al.
GLOBAL CHANGE BIOLOGY (2016)
Halobacteriovorax, an underestimated predator on bacteria: potential impact relative to viruses on bacterial mortality
Henry N. Williams et al.
ISME JOURNAL (2016)
Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment
Christopher J. Graves et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Biofilms: an emergent form of bacterial life
Hans-Curt Flemming et al.
NATURE REVIEWS MICROBIOLOGY (2016)
The ecology and biogeochemistry of stream biofilms
Tom J. Battin et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Organic loading rate: A promising microbial management tool in anaerobic digestion
Robert M. W. Ferguson et al.
WATER RESEARCH (2016)
Microbial diversity drives multifunctionality in terrestrial ecosystems
Manuel Delgado-Baquerizo et al.
NATURE COMMUNICATIONS (2016)
Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments
Patrick J. Kearns et al.
NATURE COMMUNICATIONS (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
Potential increasing dominance of heterotrophy in the global ocean
K. F. Kvale et al.
ENVIRONMENTAL RESEARCH LETTERS (2015)
Size-balanced community reorganization in response to nutrients and warming
David J. McElroy et al.
GLOBAL CHANGE BIOLOGY (2015)
Nutrient enrichment alters the consequences of species loss
Nessa E. O'Connor et al.
JOURNAL OF ECOLOGY (2015)
Biodiversity, community structure and function of biofilms in stream ecosystems
Katharina Besemer
RESEARCH IN MICROBIOLOGY (2015)
Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton
Gabriel Yvon-Durocher et al.
PLOS BIOLOGY (2015)
Two decades of warming increases diversity of a potentially lignolytic bacterial community
Grace Pold et al.
FRONTIERS IN MICROBIOLOGY (2015)
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
Kristina M. Fontanez et al.
FRONTIERS IN MICROBIOLOGY (2015)
Stressor intensity determines antagonistic interactions between species invasion and multiple stressor effects on ecosystem functioning
Siobhan R. Vye et al.
OIKOS (2015)
Seasonal variation in marine-snow-associated and ambient-water prokaryotic communities in the northern Adriatic Sea
Jana Vojvoda et al.
AQUATIC MICROBIAL ECOLOGY (2014)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Impact of warming on phyto-bacterioplankton coupling and bacterial community composition in experimental mesocosms
Markus von Scheibner et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2014)
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
Sergey I. Nikolenko et al.
BMC GENOMICS (2013)
Distinguishing between direct and indirect effects of predators in complex ecosystems
Nessa E. O'Connor et al.
JOURNAL OF ANIMAL ECOLOGY (2013)
The changing carbon cycle of the coastal ocean
James E. Bauer et al.
NATURE (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
PANDAseq: PAired-eND Assembler for Illumina sequences
Andre P. Masella et al.
BMC BIOINFORMATICS (2012)
Body mass constraints on feeding rates determine the consequences of predator loss
Florian Dirk Schneider et al.
ECOLOGY LETTERS (2012)
Warming, eutrophication, and predator loss amplify subsidies between aquatic and terrestrial ecosystems
Hamish S. Greig et al.
GLOBAL CHANGE BIOLOGY (2012)
Differential utilization of carbon substrates by aggregate-associated and water-associated heterotrophic bacterial communities
M. M. Lyons et al.
HYDROBIOLOGIA (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fishing-induced evolution of growth: concepts, mechanisms and the empirical evidence
Katja Enberg et al.
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE (2012)
IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2012)
Climate-induced changes in bottom-up and top-down processes independently alter a marine ecosystem
Malte Jochum et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
mvabund- an R package for model-based analysis of multivariate abundance data
Yi Wang et al.
METHODS IN ECOLOGY AND EVOLUTION (2012)
Estuarine and Coastal Ocean Carbon Paradox: CO2 Sinks or Sites of Terrestrial Carbon Incineration?
Wei-Jun Cai
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
The value of estuarine and coastal ecosystem services
Edward B. Barbier et al.
ECOLOGICAL MONOGRAPHS (2011)
Elevated seawater temperature causes a microbial shift on crustose coralline algae with implications for the recruitment of coral larvae
Nicole S. Webster et al.
ISME JOURNAL (2011)
Microbial community composition in sediments resists perturbation by nutrient enrichment
Jennifer L. Bowen et al.
ISME JOURNAL (2011)
Phylogenetic characterisation of bacterial assemblages and the role of sulphur-cycle bacteria in an Arenicola marina bioturbated mesocosm
Elizabeth J. Ashforth et al.
MARINE ECOLOGY PROGRESS SERIES (2011)
Increasing importance of small phytoplankton in a warmer ocean
Xose Anxelu G. Moran et al.
GLOBAL CHANGE BIOLOGY (2010)
Warming effects on marine microbial food web processes: how far can we go when it comes to predictions?
Hugo Sarmento et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Phycisphaera mikurensis gen. nov., sp nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov and Phycisphaerae classis nov in the phylum Planctomycetes
Yukiyo Fukunaga et al.
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY (2009)
The impact of remineralization depth on the air-sea carbon balance
Eun Young Kwon et al.
NATURE GEOSCIENCE (2009)
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Yuzhen Ye et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Interactive and cumulative effects of multiple human stressors in marine systems
Caitlin Mullan Crain et al.
ECOLOGY LETTERS (2008)
Bacterial communities in the initial stage of marine biofilm formation on artificial surfaces
Jin-Woo Lee et al.
JOURNAL OF MICROBIOLOGY (2008)
An Earth-system perspective of the global nitrogen cycle
Nicolas Gruber et al.
NATURE (2008)
Predatory fish loss affects the structure and functioning of a model marine food web
Nessa E. O'Connor et al.
OIKOS (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Ocean warming enhances respiration and carbon demand of coastal microbial plankton
Evaristo Vazquez-Dominguez et al.
GLOBAL CHANGE BIOLOGY (2007)
Resource limitation of bacterial production distorts the temperature dependence of oceanic carbon cycling
Angel Lopez-Urrutia et al.
ECOLOGY (2007)
Cascading effects of the loss of apex predatory sharks from a coastal ocean
Ransom A. Myers et al.
SCIENCE (2007)
Beta diversity and the scale-dependence of the productivity-diversity relationship: a test in the Californian serpentine flora
S Harrison et al.
JOURNAL OF ECOLOGY (2006)
The oceanic sink for anthropogenic CO2
CL Sabine et al.
SCIENCE (2004)
Honor thy symbionts
J Xu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Climate modelling: Severe summertime flooding in Europe
JH Christensen et al.
NATURE (2003)
Spatial scale dictates the productivity-biodiversity relationship
JM Chase et al.
NATURE (2002)
Biogenic carbon cycling in the upper ocean: Effects of microbial respiration
RB Rivkin et al.
SCIENCE (2001)
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
MT Cottrell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Habitat structure, resources and diversity: the separate effects of surface roughness and macroalgae on stream invertebrates
BJ Downes et al.
OECOLOGIA (2000)