4.7 Article

Environmental DNA metabarcoding as a tool for biodiversity assessment and monitoring: reconstructing established fish communities of north-temperate lakes and rivers

Related references

Note: Only part of the references are listed.
Review Fisheries

Knowledge Gaps and Management Priorities for Recreational Fisheries in the Developing World

Shannon D. Bower et al.

REVIEWS IN FISHERIES SCIENCE & AQUACULTURE (2020)

Article Biodiversity Conservation

Improving taxonomic resolution in large-scale freshwater biodiversity monitoring: an example using wetlands and Odonata

Jason T. Bried et al.

INSECT CONSERVATION AND DIVERSITY (2019)

Article Biodiversity Conservation

Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

Jianlong Li et al.

JOURNAL OF APPLIED ECOLOGY (2019)

Article Multidisciplinary Sciences

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

Ryan P. Kelly et al.

SCIENTIFIC REPORTS (2019)

Article Biodiversity Conservation

Rapid Expansion of Banded Killifish Fundulus diaphanus across Northern Illinois: Dramatic Recovery or Invasive Species?

Philip W. Willink et al.

AMERICAN MIDLAND NATURALIST (2018)

Article Biochemistry & Molecular Biology

The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding

Jianlong Li et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Review Biochemistry & Molecular Biology

Towards robust and repeatable sampling methods in eDNA-based studies

Ian A. Dickie et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Multidisciplinary Sciences

Global hidden harvest of freshwater fish revealed by household surveys

Etienne Fluet-Chouinard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Fisheries

Climate change as a long-term stressor for the fisheries of the Laurentian Great Lakes of North America

Paris D. Collingsworth et al.

REVIEWS IN FISH BIOLOGY AND FISHERIES (2017)

Article Multidisciplinary Sciences

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

Satoshi Yamamoto et al.

SCIENTIFIC REPORTS (2017)

Article Ecology

Bias correction of bounded location errors in presence-only data

Trevor J. Hefley et al.

METHODS IN ECOLOGY AND EVOLUTION (2017)

Article Fisheries

Fish community assessment with eDNA metabarcoding: effects of sampling design and bioinformatic filtering

Nathan T. Evans et al.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2017)

Article Biochemistry & Molecular Biology

Statistical approaches to account for false-positive errors in environmental DNA samples

Jose J. Lahoz-Monfort et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemistry & Molecular Biology

A framework for estimating the sensitivity of eDNA surveys

Elise M. Furlan et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemistry & Molecular Biology

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

Nathan T. Evans et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biodiversity Conservation

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

Jennifer L. A. Shaw et al.

BIOLOGICAL CONSERVATION (2016)

Review Environmental Sciences

The social, economic, and environmental importance of inland fish and fisheries

Abigail J. Lynch et al.

ENVIRONMENTAL REVIEWS (2016)

Article Biochemistry & Molecular Biology

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

Bernd Hanfling et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

Alice Valentini et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Detecting the movement and spawning activity of bigheaded carps with environmental DNA

Richard A. Erickson et al.

MOLECULAR ECOLOGY RESOURCES (2016)

News Item Biochemistry & Molecular Biology

How to limit false positives in environmental DNA and metabarcoding?

Gentile Francesco Ficetola et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Review Environmental Sciences

The social, economic, and environmental importance of inland fish and fisheries

Abigail J. Lynch et al.

ENVIRONMENTAL REVIEWS (2016)

Review Ecology

The ecologist's field guide to sequence-based identification of biodiversity

Simon Creer et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Article Ecology

Estimating species richness using environmental DNA

Brett P. Olds et al.

ECOLOGY AND EVOLUTION (2016)

Article Environmental Sciences

Benchmarking DNA Metabarcoding for Biodiversity-Based Monitoring and Assessment

Eva Aylagas et al.

FRONTIERS IN MARINE SCIENCE (2016)

Article Biodiversity Conservation

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

Kristy Deiner et al.

BIOLOGICAL CONSERVATION (2015)

Article Biodiversity Conservation

Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms

Caren S. Goldberg et al.

BIOLOGICAL CONSERVATION (2015)

Review Ecology

Environmental DNA for wildlife biology and biodiversity monitoring

Kristine Bohmann et al.

TRENDS IN ECOLOGY & EVOLUTION (2014)

Article Marine & Freshwater Biology

Development of a fish-based index to assess the eutrophication status of European lakes

C. Argillier et al.

HYDROBIOLOGIA (2013)

Article Ecology

Location-only and use-availability data: analysis methods converge

Lyman McDonald et al.

JOURNAL OF ANIMAL ECOLOGY (2013)

Article Multidisciplinary Sciences

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

Taylor M. Wilcox et al.

PLOS ONE (2013)

Article Biochemistry & Molecular Biology

Monitoring endangered freshwater biodiversity using environmental DNA

Philip Francis Thomsen et al.

MOLECULAR ECOLOGY (2012)

Editorial Material Biology

Ecosystem approach to inland fisheries: research needs and implementation strategies

T. Douglas Beard et al.

BIOLOGY LETTERS (2011)

Review Biodiversity Conservation

Assessing the Value of the Umbrella-Species Concept for Conservation Planning with Meta-Analysis

Margaret Branton et al.

CONSERVATION BIOLOGY (2011)

Article Biochemistry & Molecular Biology

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

Tiayyba Riaz et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Ecology

Freshwater biodiversity conservation: recent progress and future challenges

David L. Strayer et al.

JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY (2010)

Article Public, Environmental & Occupational Health

The Use of Surrogate Species in Risk Assessment: Using Life History Data to Safeguard Against False Negatives

John E. Banks et al.

RISK ANALYSIS (2010)

Article Biochemical Research Methods

adegenet:: a R package for the multivariate analysis of genetic markers

Thibaut Jombart

BIOINFORMATICS (2008)

Article Biology

Species detection using environmental DNA from water samples

Gentile Francesco Ficetola et al.

BIOLOGY LETTERS (2008)

Article Biodiversity Conservation

Effects of sample size on the performance of species distribution models

M. S. Wisz et al.

DIVERSITY AND DISTRIBUTIONS (2008)

Article Limnology

The global abundance and size distribution of lakes, ponds, and impoundments

J. A. Downing et al.

LIMNOLOGY AND OCEANOGRAPHY (2006)

Article Biodiversity Conservation

Power of monitoring programmes to detect decline and recovery of rare and vulnerable fish

D Maxwell et al.

JOURNAL OF APPLIED ECOLOGY (2005)