Related references
Note: Only part of the references are listed.Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms
Shengdan Wu et al.
MOLECULAR PLANT (2020)
Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa
Haitao Chen et al.
NATURE COMMUNICATIONS (2020)
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest
Claude Rispe et al.
BMC BIOLOGY (2020)
The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research
Chen Shen et al.
MOLECULAR PLANT (2020)
CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture
Kunling Chen et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2019)
Genomics of crop wild relatives: expanding the gene pool for crop improvement
Marta Brozynska et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1
Lin Ma et al.
MOLECULAR PLANT (2016)
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Yi Zheng et al.
MOLECULAR PLANT (2016)
A hybrid approach for de novo human genome sequence assembly and phasing
Yulia Mostovoy et al.
NATURE METHODS (2016)
Phased diploid genome assembly with single-molecule real-time sequencing
Chen-Shan Chin et al.
NATURE METHODS (2016)
mRNA biogenesis-related helicase eIF4AIII from Arabidopsis thaliana is an important factor for abiotic stress adaptation
Cecilia Pascuan et al.
PLANT CELL REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Emergence, Forage Production, and Ion Relations of Alfalfa in Response to Saline Waters
Monica V. Cornacchione et al.
CROP SCIENCE (2015)
Sodium extrusion associated with enhanced expression of SOS1 underlies different salt tolerance between Medicago falcata and Medicago truncatula seedlings
Min Liu et al.
ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Multifaceted roles of FHY3 and FAR1 in light signaling and beyond
Hai Wang et al.
TRENDS IN PLANT SCIENCE (2015)
Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
Jose J. De Vega et al.
SCIENTIFIC REPORTS (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes
Steven B. Cannon et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Introduction of Pea DNA Helicase 45 into Sugarcane (Saccharum spp. Hybrid) Enhances Cell Membrane Thermostability and Upregulation of Stress-Responsive Genes Leads to Abiotic Stress Tolerance
Sruthy Maria Augustine et al.
MOLECULAR BIOTECHNOLOGY (2015)
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
Andrew Adey et al.
GENOME RESEARCH (2014)
A reference genome for common bean and genome-wide analysis of dual domestications
Jeremy Schmutz et al.
NATURE GENETICS (2014)
Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering
Ji-Yi Zhang et al.
PLANT CELL AND ENVIRONMENT (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Analysis of genetic diversity of Ruthenia Medic (Medicago ruthenica (L.) Trautv.) in Inner Mongolia using ISSR and SSR markers
Hong-yan Li et al.
GENETIC RESOURCES AND CROP EVOLUTION (2013)
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Rajeev K. Varshney et al.
NATURE BIOTECHNOLOGY (2013)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
FAR-RED ELONGATED HYPOCOTYL3 and FAR-RED IMPAIRED RESPONSE1 Transcription Factors Integrate Light and Abscisic Acid Signaling in Arabidopsis
Weijiang Tang et al.
PLANT PHYSIOLOGY (2013)
The Amborella Genome and the Evolution of Flowering Plants
Victor A. Albert et al.
SCIENCE (2013)
Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae)
Jeremy B. Yoder et al.
SYSTEMATIC BIOLOGY (2013)
Over-expression of a DEAD-box helicase, PDH45, confers both seedling and reproductive stage salinity tolerance to rice (Oryza sativa L.)
Mahzabin Amin et al.
MOLECULAR BREEDING (2012)
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
Rajeev K. Varshney et al.
NATURE BIOTECHNOLOGY (2012)
Breeding lucerne for persistence
J. H. Bouton
CROP & PASTURE SCIENCE (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Outcomes of the search for new perennial and salt tolerant pasture plants for southern Australia
B. S. Dear et al.
AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE (2008)
Genome Structure of the Legume, Lotus japonicus
Shusei Sato et al.
DNA RESEARCH (2008)
A gene expression atlas of the model legume Medicago truncatula
Vagner A. Benedito et al.
PLANT JOURNAL (2008)
Perspective - Synteny and collinearity in plant genomes
Haibao Tang et al.
SCIENCE (2008)
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Alexandros Stamatakis et al.
SYSTEMATIC BIOLOGY (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
BIOINFORMATICS (2007)
Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
Xiao-Jing Yu et al.
GENOMICS (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Automated generation of heuristics for biological sequence comparison
GS Slater et al.
BMC BIOINFORMATICS (2005)
Temperature and water availability effects on radiation and water use efficiencies in alfalfa (Medicago sativa L.)
DJ Collino et al.
AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE (2005)
Rfam: annotating non-coding RNAs in complete genomes
S Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
BLAT - The BLAST-like alignment tool
WJ Kent
GENOME RESEARCH (2002)
The effect of drought and ultraviolet radiation on growth and stress markers in pea and wheat
V Alexieva et al.
PLANT CELL AND ENVIRONMENT (2001)
InterProScan - an integration platform for the signature-recognition methods in InterPro
EM Zdobnov et al.
BIOINFORMATICS (2001)
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
A Bairoch et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
