Related references
Note: Only part of the references are listed.Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
Christine G. Elsik et al.
NUCLEIC ACIDS RESEARCH (2016)
What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual
Lynsey K. Whitacre et al.
BMC GENOMICS (2015)
The landscape of genomic imprinting across diverse adult human tissues
Yael Baran et al.
GENOME RESEARCH (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Morphological and Gene Expression Changes in Cattle Embryos from Hatched Blastocyst to Early Gastrulation Stages after Transfer of In Vitro Produced Embryos
Jessica van Leeuwen et al.
PLOS ONE (2015)
Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction
Zhiyuan Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
RNA EDITING RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself
Brian J. Liddicoat et al.
SCIENCE (2015)
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies
Shuai Yuan et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Sexual Dimorphism in Developmental Programming of the Bovine Preimplantation Embryo Caused by Colony-Stimulating Factor 2
Kyle B. Dobbs et al.
BIOLOGY OF REPRODUCTION (2014)
Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing
Coline Billerey et al.
BMC GENOMICS (2014)
RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations
Steven C. Munger et al.
GENETICS (2014)
Using next-generation RNA sequencing to identify imprinted genes
X. Wang et al.
HEREDITY (2014)
Epigenetics and imprinting in human disease
Jennifer M. Kalish et al.
INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2014)
The role of genomic imprinting in biology and disease: an expanding view
Jo Peters
NATURE REVIEWS GENETICS (2014)
RefSeq: an update on mammalian reference sequences
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2014)
RADAR: a rigorously annotated database of A-to-I RNA editing
Gokul Ramaswami et al.
NUCLEIC ACIDS RESEARCH (2014)
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
Qiaolin Deng et al.
SCIENCE (2014)
Lineage-specific regulation of imprinted X inactivation in extraembryonic endoderm stem cells
Sarra Merzouk et al.
EPIGENETICS & CHROMATIN (2014)
Genomic Imprinting in Farm Animals
Xiuchun (Cindy) Tian
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 2 (2014)
Mammalian conserved ADAR targets comprise only a small fragment of the human editosome
Yishay Pinto et al.
GENOME BIOLOGY (2014)
Reliable Identification of Genomic Variants from RNA-Seq Data
Robert Piskol et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome
Kraig R. Stevenson et al.
BMC GENOMICS (2013)
X-Inactivation, Imprinting, and Long Noncoding RNAs in Health and Disease
Jeannie T. Lee et al.
CELL (2013)
Large offspring syndrome A bovine model for the human loss-of-imprinting overgrowth syndrome Beckwith-Wiedemann
Zhiyuan Chen et al.
EPIGENETICS (2013)
Identifying RNA editing sites using RNA sequencing data alone
Gokul Ramaswami et al.
NATURE METHODS (2013)
Deciphering the functions and regulation of brain-enriched A-to-I RNA editing
Jin Billy Li et al.
NATURE NEUROSCIENCE (2013)
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
Simon Anders et al.
NATURE PROTOCOLS (2013)
CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
Liguo Wang et al.
NUCLEIC ACIDS RESEARCH (2013)
Loss of DNMT1o Disrupts Imprinted X Chromosome Inactivation and Accentuates Placental Defects in Females
Serge McGraw et al.
PLOS GENETICS (2013)
Random X inactivation in the mule and horse placenta
Xu Wang et al.
GENOME RESEARCH (2012)
Ube3a-ATS is an atypical RNA polymerase II transcript that represses the paternal expression of Ube3a
Linyan Meng et al.
HUMAN MOLECULAR GENETICS (2012)
Accurate identification of human Alu and non-Alu RNA editing sites
Gokul Ramaswami et al.
NATURE METHODS (2012)
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Davis J. McCarthy et al.
NUCLEIC ACIDS RESEARCH (2012)
Critical Evaluation of Imprinted Gene Expression by RNA-Seq: A New Perspective
Brian DeVeale et al.
PLOS GENETICS (2012)
High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
Petr Daneck et al.
GENOME BIOLOGY (2012)
Expression of KCNQ1OT1, CDKN1C, H19, and PLAGL1 and the methylation patterns at the KvDMR1 and H19/IGF2 imprinting control regions is conserved between human and bovine
Katherine Marie Robbins et al.
JOURNAL OF BIOMEDICAL SCIENCE (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Mammalian Genomic Imprinting
Marisa S. Bartolomei et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
Functions and Regulation of RNA Editing by ADAR Deaminases
Kazuko Nishikura
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
Murray P. Cox et al.
BMC BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Joshua Z. Levin et al.
NATURE METHODS (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
Jacob F. Degner et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Characterization of Conserved and Nonconserved Imprinted Genes in Swine
Steve R. Bischoff et al.
BIOLOGY OF REPRODUCTION (2009)
Characterization of the Bovine Pseudoautosomal Region and Comparison with Sheep, Goat, and Other Mammalian Pseudoautosomal Regions
P. J. Das et al.
CYTOGENETIC AND GENOME RESEARCH (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Global Survey of Genomic Imprinting by Transcriptome Sequencing
Tomas Babak et al.
CURRENT BIOLOGY (2008)
Imprinting of an evolutionarily conserved antisense transcript gene APeg3
Jung Ha Choo et al.
GENE (2008)
Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain
Xu Wang et al.
PLOS ONE (2008)
Mechanisms regulating imprinted genes in clusters
Carol A. Edwards et al.
CURRENT OPINION IN CELL BIOLOGY (2007)
Genetics of global gene expression
Matthew V. Rockman et al.
NATURE REVIEWS GENETICS (2006)
Assessment of genomic imprinting of SLC38A4, NNAT, NAP1L5, and H19 in cattle
Ismail Zaitoun et al.
BMC GENETICS (2006)
RNA editing level in the mouse is determined by the genomic repeat repertoire
Yossef Neeman et al.
RNA (2006)
Errors in development of fetuses and placentas from in vitro-produced bovine embryos
PW Farin et al.
THERIOGENOLOGY (2006)
Comparative genomics approach toward critical determinants for the imprinting of an evolutionarily conserved gene Impact
K Okamura et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)
Conservation of genomic imprinting at the XIST, IGF2, and GTL2 loci in the bovine
SV Dindot et al.
MAMMALIAN GENOME (2004)
Neurons but not glial cells show reciprocal imprinting of sense and antisense transcripts of Ube3a
K Yarnasaki et al.
HUMAN MOLECULAR GENETICS (2003)
Conservation of IGF2-H19 and IGF2R imprinting in sheep: effects of somatic cell nuclear transfer
LE Young et al.
MECHANISMS OF DEVELOPMENT (2003)
Aberrant patterns of X chromosome inactivation in bovine clones
F Xue et al.
NATURE GENETICS (2002)
BLAT - The BLAST-like alignment tool
WJ Kent
GENOME RESEARCH (2002)
A direct approach to false discovery rates
JD Storey
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2002)
Imprinted X inactivation in eutherians: a model of gametic execution and zygotic relaxation
KD Huynh et al.
CURRENT OPINION IN CELL BIOLOGY (2001)
Epigenetic change in IGF2R is associated with fetal overgrowth after sheep embryo culture
LE Young et al.
NATURE GENETICS (2001)
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
M Higuchi et al.
NATURE (2000)
Bovine blastocyst-derived trophectoderm and endoderm cell cultures: Interferon tau and transferrin expression as respective in vitro markers
NC Talbot et al.
BIOLOGY OF REPRODUCTION (2000)