4.7 Article

ZEAL: protein structure alignment based on shape similarity

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Real time structural search of the Protein Data Bank

Dmytro Guzenko et al.

PLOS COMPUTATIONAL BIOLOGY (2020)

Article Biochemical Research Methods

A global map of the protein shape universe

Xusi Han et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Correction Biochemistry & Molecular Biology

UniProt: the universal protein knowledgebase (vol 45, pg D158, 2017)

Alexandre Renaux

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemical Research Methods

MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvature

Nithin Shivashankar et al.

BMC BIOINFORMATICS (2016)

Article Biochemical Research Methods

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

Brian G. Pierce et al.

BIOINFORMATICS (2014)

Article Chemistry, Multidisciplinary

Three-dimensional single-particle imaging using angular correlations from X-ray laser data

Haiguang Liu et al.

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (2013)

Article Chemistry, Physical

Fitting Multimeric Protein Complexes into Electron Microscopy Maps Using 3D Zernike Descriptors

Juan Esquivel-Rodriguez et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2012)

Article Materials Science, Multidisciplinary

Precipitate shape fitting and reconstruction by means of 3D Zernike functions

P. G. Callahan et al.

MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING (2012)

Article Biochemistry & Molecular Biology

ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins

Janez Konc et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Chemistry, Medicinal

Rapid Shape-Based Ligand Alignment and Virtual Screening Method Based on Atom/Feature-Pair Similarities and Volume Overlap Scoring

G. Madhavi Sastry et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2011)

Article Biochemical Research Methods

How significant is a protein structure similarity with TM-score=0.5?

Jinrui Xu et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Improved protein surface comparison and application to low-resolution protein structure data

Lee Sael et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

HexServer: an FFT-based protein docking server powered by graphics processors

Gary Macindoe et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

MolLoc: a web tool for the local structural alignment of molecular surfaces

Stefano Angaran et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform

Dong Xu et al.

PLOS ONE (2009)

Article Biochemistry & Molecular Biology

Fast protein tertiary structure retrieval based on global surface shape similarity

Lee Sael et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Computer Science, Interdisciplinary Applications

A stochastic radial basis function method for the global optimization of expensive functions

Rommel G. Regis et al.

INFORMS JOURNAL ON COMPUTING (2007)

Article Biochemistry & Molecular Biology

PatchDock and SymmDock: servers for rigid and symmetric docking

D Schneidman-Duhovny et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

TM-align: a protein structure alignment algorithm based on the TM-score

Y Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Chemistry, Multidisciplinary

SURFCOMP:: A novel graph-based approach to molecular surface comparison

C Hofbauer et al.

JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2004)

Article Biochemistry & Molecular Biology

Scoring function for automated assessment of protein structure template quality

Y Zhang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biochemical Research Methods

PISCES: a protein sequence culling server

GL Wang et al.

BIOINFORMATICS (2003)

Article Mathematics, Applied

Angles in complex vector spaces

K Scharnhorst

ACTA APPLICANDAE MATHEMATICAE (2001)