Related references
Note: Only part of the references are listed.clinker & clustermap.js: automatic generation of gene cluster comparison figures
Cameron L. M. Gilchrist et al.
BIOINFORMATICS (2021)
A computational framework to explore large-scale biosynthetic diversity
Jorge C. Navarro-Munoz et al.
NATURE CHEMICAL BIOLOGY (2020)
Symbiotic bacterial communities in rainforest fungus-farming ants: evidence for species and colony specificity
Mariane U. V. Ronque et al.
SCIENTIFIC REPORTS (2020)
Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment
Mariana O. Barcoto et al.
SCIENTIFIC REPORTS (2020)
Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System
Charlotte B. Francoeur et al.
MBIO (2020)
Metagenomics Reveals Diet-Specific Specialization of Bacterial Communities in Fungus Gardens of Grass- and Dicot-Cutter Ants
Lily Khadempour et al.
FRONTIERS IN MICROBIOLOGY (2020)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
The molecular phylogenetics of Trachymyrmex Forel ants and their fungal cultivars provide insights into the origin and coevolutionary history of 'higher-attine' ant agriculture
Scott E. Solomon et al.
SYSTEMATIC ENTOMOLOGY (2019)
Versatile and Dynamic Symbioses Between Insects and Burkholderia Bacteria
Martin Kaltenpoth et al.
Annual Review of Entomology (2019)
Defense contracts: molecular protection in insect-microbe symbioses
Ethan B. Van Arnam et al.
CHEMICAL SOCIETY REVIEWS (2018)
An antifungal polyketide associated with horizontally acquired genes supports symbiont-mediated defense in Lagria villosa beetles
Laura Florez et al.
NATURE COMMUNICATIONS (2018)
Isolation of Burkholderia cepacia JBK9 with plant growth-promoting activity while producing pyrrolnitrin antagonistic to plant fungal diseases
Byung Kwon Jung et al.
APPLIED BIOLOGICAL CHEMISTRY (2018)
Convergent evolution of complex structures for ant-bacterial defensive symbiosis in fungus-farming ants
Hongjie Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2017)
Dry habitats were crucibles of domestication in the evolution of agriculture in ants
Michael G. Branstetter et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Symbiont Acquisition and Replacement as a Source of Ecological Innovation
Sailendharan Sudakaran et al.
TRENDS IN MICROBIOLOGY (2017)
Lateral Gene Transfer Dynamics in the Ancient Bacterial Genus Streptomyces
Bradon R. McDonald et al.
MBIO (2017)
Antibiotic-producing symbionts dynamically transition between plant pathogenicity and insect-defensive mutualism
Laura V. Florez et al.
NATURE COMMUNICATIONS (2017)
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
Michael Richter et al.
BIOINFORMATICS (2016)
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
Leighton Pritchard et al.
ANALYTICAL METHODS (2016)
The rules for symbiont community assembly change along a mutualism-parasitism continuum
James Skelton et al.
JOURNAL OF ANIMAL ECOLOGY (2016)
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates
Lily Khadempour et al.
MOLECULAR ECOLOGY (2016)
Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis
Filip Husnik et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
Siavash Mirarab et al.
BIOINFORMATICS (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
Yongchao Liu et al.
BIOINFORMATICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
Frank O. Aylward et al.
ISME JOURNAL (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Burkholdines from Burkholderia ambifaria: Antifungal Agents and Possible Virulence Factors
Zhenjian Lin et al.
JOURNAL OF NATURAL PRODUCTS (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Wolbachia induces reactive oxygen species (ROS)-dependent activation of the Toll pathway to control dengue virus in the mosquito Aedes aegypti
Xiaoling Pan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants
Frank O. Aylward et al.
Insects (2012)
Genetic and Biochemical Map for the Biosynthesis of Occidiofungin, an Antifungal Produced by Burkholderia contaminans Strain MS14
Ganyu Gu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants
Ilka Schoenian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity
Garret Suen et al.
PLOS GENETICS (2010)
The microbial dimension in insect nutritional ecology
A. E. Douglas
FUNCTIONAL ECOLOGY (2009)
A new selective medium for Burkholderia caryophylli, the causal agent of carnation bacterial wilt
T. Kawanishi et al.
PLANT PATHOLOGY (2009)
Symbiotic Nitrogen Fixation in the Fungus Gardens of Leaf-Cutter Ants
Adrian A. Pinto-Tomas et al.
SCIENCE (2009)
Burkholderia rhizoxinica sp nov and Burkholderia endofungorum sp nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus
Laila P. Partida-Martinez et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants
CR Currie et al.
SCIENCE (2006)
Pathogenic fungus harbours endosymbiotic bacteria for toxin production
LP Partida-Martinez et al.
NATURE (2005)
Ocurrence of the antibiotic producing bacterium Burkholderia sp in colonies of the leaf-cutting ant Atta sexdens rubropilosa
AV Santos et al.
FEMS MICROBIOLOGY LETTERS (2004)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Weeding and grooming of pathogens in agriculture by ants
CR Currie et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)
A community of ants, fungi, and bacteria: A multilateral approach to studying symbiosis
CR Currie
ANNUAL REVIEW OF MICROBIOLOGY (2001)