4.7 Review

Novel nucleic acid origami structures and conventional molecular beacon-based platforms: a comparison in biosensing applications

Journal

ANALYTICAL AND BIOANALYTICAL CHEMISTRY
Volume 413, Issue 24, Pages 6063-6077

Publisher

SPRINGER HEIDELBERG
DOI: 10.1007/s00216-021-03309-4

Keywords

DNA; Biosensor; Origami; Molecular beacon; Nanostructures; Fluorescence

Funding

  1. Universita degli Studi di Catania within the CRUI-CARE Agreement
  2. MUR Prin [2017RHX2E4]
  3. European Union [764281]
  4. Universita degli Studi di Catania, STARTING GRANT 2020, project PATmiREC
  5. Marie Curie Actions (MSCA) [764281] Funding Source: Marie Curie Actions (MSCA)

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Nucleic acid nanotechnology focuses on designing and developing synthetic nucleic acid strands to create nanosized functional systems. The structural properties and conformational polymorphism of nucleic acid sequences make nucleic acid nanostructures attractive in biosensing applications. Recent advances in biosensing have been derived from molecular beacon and DNA origami structures, each offering unique characteristics and potentials in the field.
Nucleic acid nanotechnology designs and develops synthetic nucleic acid strands to fabricate nanosized functional systems. Structural properties and the conformational polymorphism of nucleic acid sequences are inherent characteristics that make nucleic acid nanostructures attractive systems in biosensing. This review critically discusses recent advances in biosensing derived from molecular beacon and DNA origami structures. Molecular beacons belong to a conventional class of nucleic acid structures used in biosensing, whereas DNA origami nanostructures are fabricated by fully exploiting possibilities offered by nucleic acid nanotechnology. We present nucleic acid scaffolds divided into conventional hairpin molecular beacons and DNA origami, and discuss some relevant examples by focusing on peculiar aspects exploited in biosensing applications. We also critically evaluate analytical uses of the synthetic nucleic acid structures in biosensing to point out similarities and differences between traditional hairpin nucleic acid sequences and DNA origami.

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