4.7 Article

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults

Related references

Note: Only part of the references are listed.
Article Medicine, General & Internal

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

Chaolin Huang et al.

LANCET (2020)

Article Multidisciplinary Sciences

A pneumonia outbreak associated with a new coronavirus of probable bat origin

Peng Zhou et al.

NATURE (2020)

Article Medicine, General & Internal

Clinical Characteristics of Coronavirus Disease 2019 in China

W. Guan et al.

NEW ENGLAND JOURNAL OF MEDICINE (2020)

Article Medicine, General & Internal

A Novel Coronavirus from Patients with Pneumonia in China, 2019

Na Zhu et al.

NEW ENGLAND JOURNAL OF MEDICINE (2020)

Editorial Material Cell Biology

COVID-19: treating and managing severe cases

Jingwen Ai et al.

CELL RESEARCH (2020)

Editorial Material Cell Biology

COVID-19: towards understanding of pathogenesis

Wei Cao et al.

CELL RESEARCH (2020)

Letter Gastroenterology & Hepatology

Prolonged presence of SARS-CoV-2 viral RNA in faecal samples

Yongjian Wu et al.

LANCET GASTROENTEROLOGY & HEPATOLOGY (2020)

Review Virology

Gut microbiota and Covid-19-possible link and implications

Debojyoti Dhar et al.

VIRUS RESEARCH (2020)

Article Infectious Diseases

Epidemiological and clinical characteristics of COVID-19 patients in Nantong, China

Renfei Lu et al.

JOURNAL OF INFECTION IN DEVELOPING COUNTRIES (2020)

Review Hematology

Cross talk between neutrophils and the microbiota

Dachuan Zhang et al.

BLOOD (2019)

Article Multidisciplinary Sciences

The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans

Sabina Leanti La Rosa et al.

NATURE COMMUNICATIONS (2019)

Article Microbiology

The neuroactive potential of the human gut microbiota in quality of life and depression

Mireia Valles-Colomer et al.

NATURE MICROBIOLOGY (2019)

Review Infectious Diseases

Relationship between nasopharyngeal microbiota and patient's susceptibility to viral infection

Gregory Dubourg et al.

EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2019)

Article Biochemistry & Molecular Biology

Location, Location, Location-Commensalism, Damage and Evolution of the Pathogenic Neisseria

H. Steven Seifert

JOURNAL OF MOLECULAR BIOLOGY (2019)

Review Immunology

Microbes, metabolites, and the gut-lung axis

Anh Thu Dang et al.

MUCOSAL IMMUNOLOGY (2019)

Review Immunology

The influence of the microbiome on respiratory health

Tomasz P. Wypych et al.

NATURE IMMUNOLOGY (2019)

Article Biotechnology & Applied Microbiology

Blautia genus associated with visceral fat accumulation in adults 20-76 years of age

Naoki Ozato et al.

NPJ BIOFILMS AND MICROBIOMES (2019)

Review Microbiology

Fusobacterium nucleatum - symbiont, opportunist and oncobacterium

Caitlin A. Brennan et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Cytoscape Automation: empowering workflow-based network analysis

David Otasek et al.

GENOME BIOLOGY (2019)

Article Critical Care Medicine

Mechanisms and Targeted Therapies for Pseudomonas aeruginosa Lung Infection

Colleen S. Curran et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2018)

Review Microbiology

Best practices for analysing microbiomes

Rob Knight et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A Lytic Bacteriophage for Controlling Pseudomonas lactis in Raw Cow's Milk

Chikage Tanaka et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Temporal development of the gut microbiome in early childhood from the TEDDY study

Christopher J. Stewart et al.

NATURE (2018)

Article Microbiology

Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity

Eirin Esaiassen et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2017)

Review Microbiology

The microbiota of the respiratory tract: gatekeeper to respiratory health

Wing Ho Man et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Article Immunology

Human Gut Symbiont Roseburia hominis Promotes and Regulates Innate Immunity

Angela M. Patterson et al.

FRONTIERS IN IMMUNOLOGY (2017)

Article Critical Care Medicine

Nasopharyngeal Microbiota, Host Transcriptome, and Disease Severity in Children with Respiratory Syncytial Virus Infection

Wouter A. A. de Steenhuijsen Piters et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2016)

Article Biotechnology & Applied Microbiology

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D'Amore et al.

BMC GENOMICS (2016)

Article Infectious Diseases

Morbidity and mortality attributable to Rothia bacteremia in neutropenic and nonneutropenic patients

M. Z. Abidi et al.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2016)

Review Multidisciplinary Sciences

The microbiota in adaptive immune homeostasis and disease

Kenya Honda et al.

NATURE (2016)

Article Biochemistry & Molecular Biology

Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation

Kei E. Fujimura et al.

NATURE MEDICINE (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Microbiology

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

Claudio Donati et al.

NATURE MICROBIOLOGY (2016)

Review Immunology

Gut microbiota, metabolites and host immunity

Michelle G. Rooks et al.

NATURE REVIEWS IMMUNOLOGY (2016)

Review Microbiology

Actinomyces and Related Organisms in Human Infections

Eija Kononen et al.

CLINICAL MICROBIOLOGY REVIEWS (2015)

Article Microbiology

Rothia Bacteremia: a 10-Year Experience at Mayo Clinic, Rochester, Minnesota

Poornima Ramanan et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Dynamics and associations of microbial community types across the human body

Tao Ding et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

Ribosomal Database Project: data and tools for high throughput rRNA analysis

James R. Cole et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Review Immunology

ACE2-From the renin-angiotensin system to gut microbiota and malnutrition

Thomas Perlot et al.

MICROBES AND INFECTION (2013)

Article Multidisciplinary Sciences

Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

Ian Holmes et al.

PLOS ONE (2012)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)