4.7 Article

Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer

Related references

Note: Only part of the references are listed.
Article Cell Biology

Intermittent Fasting Confers Protection in CNS Autoimmunity by Altering the Gut Microbiota

Francesca Cignarella et al.

CELL METABOLISM (2018)

Article Gastroenterology & Hepatology

Iron Sequestration in Microbiota Biofilms As A Novel Strategy for Treating Inflammatory Bowel Disease

Jean-Paul Motta et al.

INFLAMMATORY BOWEL DISEASES (2018)

Article Multidisciplinary Sciences

Structural basis for the role of serine- rich repeat proteins from Lactobacillus reuteri in gut microbe-host interactions

Saannya Sequeira et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

Gut microbiota utilize immunoglobulin A for mucosal colonization

G. P. Donaldson et al.

SCIENCE (2018)

Article Cell Biology

Microbial ecology perturbation in human IgA deficiency

Jehane Fadlallah et al.

SCIENCE TRANSLATIONAL MEDICINE (2018)

Article Microbiology

Wicked: The untold story of ciprofloxacin

Zachary C. Conley et al.

PLOS PATHOGENS (2018)

Review Gastroenterology & Hepatology

Systematic review: human gut dysbiosis induced by non-antibiotic prescription medications

Q. Le Bastard et al.

ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2018)

Review Biochemistry & Molecular Biology

Oxygen as a driver of gut dysbiosis

Fabian Rivera-Chavez et al.

FREE RADICAL BIOLOGY AND MEDICINE (2017)

Article Psychology, Biological

Diet-driven microbiota dysbiosis is associated with vagal remodeling and obesity

Tanusree Sen et al.

PHYSIOLOGY & BEHAVIOR (2017)

Article Multidisciplinary Sciences

Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice

Jessica L. Mark Welch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Microbiology

The biogeography of polymicrobial infection

Apollo Stacy et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Review Microbiology

Gut biogeography of the bacterial microbiota

Gregory P. Donaldson et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Review Biochemistry & Molecular Biology

Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria

Martina Valentini et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Multidisciplinary Sciences

Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia

Ryu Okumura et al.

NATURE (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Multidisciplinary Sciences

Biogeography of a human oral microbiome at the micron scale

Jessica L. Mark Welch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16

Joakim H. Bergstrom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Microbiology

High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice

Shinsaku Okai et al.

NATURE MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells

Koji Atarashi et al.

Review Infectious Diseases

Biofilm-specific antibiotic tolerance and resistance

I. Olsen

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2015)

Article Multidisciplinary Sciences

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

Benoit Chassaing et al.

NATURE (2015)

Article Multidisciplinary Sciences

The outer mucus layer hosts a distinct intestinal microbial niche

Hai Li et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease

Noah W. Palm et al.

Article Biochemistry & Molecular Biology

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

Christoph A. Thaiss et al.

Article Microbiology

The Treatment-Naive Microbiome in New-Onset Crohn's Disease

Dirk Gevers et al.

CELL HOST & MICROBE (2014)

Article Ecology

Ecosystem stability in space: α, β and γ variability

Shaopeng Wang et al.

ECOLOGY LETTERS (2014)

Review Gastroenterology & Hepatology

The gastrointestinal mucus system in health and disease

Malin E. V. Johansson et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2013)

Article Genetics & Heredity

Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont

Steven A. Frese et al.

PLOS GENETICS (2013)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Article Gastroenterology & Hepatology

CD4+CD25+ Regulatory T Cells Suppress Th17-Responses in an Experimental Colitis Model

Haruei Ogino et al.

DIGESTIVE DISEASES AND SCIENCES (2011)

Review Immunology

Adaptive Immune Regulation in the Gut: T Cell-Dependent and T Cell-Independent IgA Synthesis

Sidonia Fagarasan et al.

ANNUAL REVIEW OF IMMUNOLOGY, VOL 28 (2010)

Article Multidisciplinary Sciences

Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

Nadja Larsen et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Bacteria Penetrate the Inner Mucus Layer before Inflammation in the Dextran Sulfate Colitis Model

Malin E. V. Johansson et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Light at night increases body mass by shifting the time of food intake

Laura K. Fonken et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Review Immunology

The gut microbiota shapes intestinal immune responses during health and disease

June L. Round et al.

NATURE REVIEWS IMMUNOLOGY (2009)

Article Multidisciplinary Sciences

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

Malin E. V. Johansson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Immunology

The regulation of IgA class switching

Andrea Cerutti

NATURE REVIEWS IMMUNOLOGY (2008)

Article Microbiology

Microbial diversity-productivity relationships in aquatic ecosystems

Val H. Smith

FEMS MICROBIOLOGY ECOLOGY (2007)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

Catherine A. Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

UniFrac: a new phylogenetic method for comparing microbial communities

C Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Colonization of mucin by human intestinal bacteria and establishment of biofilm communities in a two-stage continuous culture system

S Macfarlane et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Microbiology

Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease

A Swidsinski et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Glycan foraging in vivo by an intestine-adapted bacterial symbiont

JL Sonnenburg et al.

SCIENCE (2005)

Article Gastroenterology & Hepatology

Spatial organization of bacterial flora in normal and inflamed intestine: A fluorescence in situ hybridization study in mice

Alexander Swidsinski et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2005)

Review Microbiology

Bacterial biofilms: From the natural environment to infectious diseases

L Hall-Stoodley et al.

NATURE REVIEWS MICROBIOLOGY (2004)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Article Biotechnology & Applied Microbiology

Real-time PCR quantitation of clostridia in Feces of autistic children

YL Song et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Review Immunology

Biofilms: Microbial life on surfaces

RM Donlan

EMERGING INFECTIOUS DISEASES (2002)

Review Microbiology

Bacterial adhesion: Seen any good biofilms lately?

WM Dunne

CLINICAL MICROBIOLOGY REVIEWS (2002)

Article Gastroenterology & Hepatology

Mucosal flora in inflammatory bowel disease

A Swidsinski et al.

GASTROENTEROLOGY (2002)