Related references
Note: Only part of the references are listed.Assessing SIRAH's Capability to Simulate Intrinsically Disordered Proteins and Peptides
Florencia Klein et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2021)
Amyloid aggregation simulations: challenges, advances and perspectives
Birgit Strodel
CURRENT OPINION IN STRUCTURAL BIOLOGY (2021)
Nanoscopic Insights of Amphiphilic Peptide against the Oligomer Assembly Process to Treat Huntington's Disease
Ruei-Yu He et al.
ADVANCED SCIENCE (2020)
Bottom-up coarse-grained models for external fields and interfaces
Michael DeLyser et al.
JOURNAL OF CHEMICAL PHYSICS (2020)
The SIRAH 2.0 Force Field: Altius, Fortius, Citius
Matias R. Machado et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2019)
Insights into the Aggregation Mechanism of PolyQ Proteins with Different Glutamine Repeat Lengths
Tetyana Yushchenko et al.
BIOPHYSICAL JOURNAL (2018)
Early stage aggregation of a coarse-grained model of polyglutamine
Jason Haaga et al.
JOURNAL OF CHEMICAL PHYSICS (2018)
Cues to Opening Mechanisms From in Silico Electric Field Excitation of Cx26 Hemichannel and in Vitro Mutagenesis Studies in HeLa Transfectans
Francesco Zonta et al.
FRONTIERS IN MOLECULAR NEUROSCIENCE (2018)
Polyglutamine Repeats in Neurodegenerative Diseases
Andrew P. Lieberman et al.
Annual Review of Pathology-Mechanisms of Disease (2018)
On the Applicability of Force Fields To Study the Aggregation of Amyloidogenic Peptides Using Molecular Dynamics Simulations
Martin Carballo-Pacheco et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2018)
Molecular dynamics analysis of the aggregation propensity of polyglutamine segments
Jingran Wen et al.
PLOS ONE (2017)
Alpha-synuclein oligomers: a new hope
Nora Bengoa-Vergniory et al.
ACTA NEUROPATHOLOGICA (2017)
Unraveling the Aggregation Propensity of Human Insulin C-Peptide
Paraskevi L. Tsiolaki et al.
BIOPOLYMERS (2017)
SIRAH tools: mapping, backmapping and visualization of coarse-grained models
Matias R. Machado et al.
BIOINFORMATICS (2016)
Soluble Oligomers of PolyQ-Expanded Huntingtin Target a Multiplicity of Key Cellular Factors
Yujin E. Kim et al.
MOLECULAR CELL (2016)
Molecular Structure of Aggregated Amyloid-β: Insights from Solid-State Nuclear Magnetic Resonance
Robert Tycko
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2016)
All-atom molecular dynamics analysis of multi-peptide systems reproduces peptide solubility in line with experimental observations
Yutaka Kuroda et al.
SCIENTIFIC REPORTS (2016)
Computational Studies of Protein Aggregation: Methods and Applications
Alex Morriss-Andrews et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 66 (2015)
An Analysis of Biomolecular Force Fields for Simulations of Polyglutamine in Solution
Aaron M. Fluitt et al.
BIOPHYSICAL JOURNAL (2015)
Ataxin-1 oligomers induce local spread of pathology and decreasing them by passive immunization slows Spinocerebellar ataxia type 1 phenotypes
Cristian A. Lasagna-Reeves et al.
ELIFE (2015)
A Coarse-Grained Model for Polyglutamine Aggregation Modulated by Amphipathic Flanking Sequences
Kiersten M. Ruff et al.
BIOPHYSICAL JOURNAL (2014)
Full-length TDP-43 forms toxic amyloid oligomers that are present in frontotemporal lobar dementia-TDP patients
Yu-Sheng Fang et al.
NATURE COMMUNICATIONS (2014)
Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners
Spyros Petrakis et al.
BIOESSAYS (2013)
Soluble forms of polyQ-expanded huntingtin rather than large aggregates cause endoplasmic reticulum stress
Julia Leitman et al.
NATURE COMMUNICATIONS (2013)
Mechanisms mediating spinal and bulbar muscular atrophy: investigations into polyglutamine-expanded androgen receptor function and dysfunction
Lenore K. Beitel et al.
FRONTIERS IN NEUROLOGY (2013)
Protonation State of a Conserved Acidic Amino Acid Involved in Na+ Binding to the Glutamate Transporter EAAC1
Juddy Mwaura et al.
ACS CHEMICAL NEUROSCIENCE (2012)
Concentration and Temperature Dependences of Polyglutamine Aggregation by Multiscale Coarse-Graining Molecular Dynamics Simulations
Li Deng et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions
Mats H. M. Olsson et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Structural features of proinsulin C-peptide oligomeric and amyloid states
Jesper Lind et al.
FEBS JOURNAL (2010)
Another Coarse Grain Model for Aqueous Solvation: WAT FOUR?
Leonardo Darre et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
Molecular Dynamics Simulations of Polyglutamine Aggregation Using Solvent-Free Multiscale Coarse-Grained Models
Yanting Wang et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
Generic coarse-grained model for protein folding and aggregation
Tristan Bereau et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Islet amyloid in type 2 diabetes, and the toxic oligomer hypothesis
Leena Haataja et al.
ENDOCRINE REVIEWS (2008)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Aggregation of small peptides studied by molecular dynamics simulations
Dagmar Flock et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Polyglutamine aggregation nucleation: Thermodynamics of a highly unfavorable protein folding reaction
AM Bhattacharyya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The most infectious prion protein particles
JR Silveira et al.
NATURE (2005)
Solution structure of human proinsulin C-peptide
CE Munte et al.
FEBS JOURNAL (2005)
A vibrational spectral maker for probing the hydrogen-bonding status of protonated Asp and Glu residues
BN Nie et al.
BIOPHYSICAL JOURNAL (2005)
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins
M Heinig et al.
NUCLEIC ACIDS RESEARCH (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Huntington's disease age-of-onset linked to polyglutamine aggregation nucleation
SM Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Share Paper
