4.7 Review

Linking Plant Secondary Metabolites and Plant Microbiomes: A Review

Related references

Note: Only part of the references are listed.
Review Oncology

Modulation of dysregulated cancer metabolism by plant secondary metabolites: A mechanistic review

Sajad Fakhri et al.

Summary: Signaling pathways and metabolites control metabolism in normal and cancer cells. Abnormal activities of these pathways are noticeable events in cancer and targeting them has become a hot topic in cancer research. Natural secondary metabolites have shown promising anticancer effects by targeting dysregulated signaling pathways linked to cancer metabolism.

SEMINARS IN CANCER BIOLOGY (2022)

Review Cell Biology

A practical guide to amplicon and metagenomic analysis of microbiome data

Yong-Xin Liu et al.

Summary: This article systematically summarizes the advantages and limitations of methods in microbiome research, recommends specific analysis flows and common software, introduces statistical and visualization methods suitable for microbiome analysis, and provides a reproducible analysis guide. The goal is to help researchers conduct data analysis more effectively and efficiently mine the biological significance behind the data.

PROTEIN & CELL (2021)

Article Ecology

Achieving similar root microbiota composition in neighbouring plants through airborne signalling

Hyun Gi Kong et al.

Summary: Plants can synchronize the composition of rhizosphere microbiota in surrounding plants through aerial signals, such as volatile organic compounds (VOCs), illustrating the essential role of environmental signals in plant communication and interactions.

ISME JOURNAL (2021)

Review Plant Sciences

Coumarin Communication Along the Microbiome-Root-Shoot Axis

Max J. J. Stassen et al.

Summary: Plants shape their rhizosphere microbiome by secreting root exudates into the soil. Coumarins, root-exuded compounds, have been identified as key players in plant-microbiome communication, promoting plant growth and health through iron uptake and antimicrobial activity. Coumarins may also play a role in signaling events from the microbiome to the root and shoot, similar to other compounds like strigolactones and flavonoids.

TRENDS IN PLANT SCIENCE (2021)

Article Chemistry, Applied

Volatile profile ofEchinacea purpureaplants afterin vitroendophyte infection

Valentina Maggini et al.

NATURAL PRODUCT RESEARCH (2020)

Review Plant Sciences

Root exudates: from plant to rhizosphere and beyond

Vicente Vives-Peris et al.

PLANT CELL REPORTS (2020)

Review Plant Sciences

Plant root exudation under drought: implications for ecosystem functioning

Alex Williams et al.

NEW PHYTOLOGIST (2020)

Article Biochemical Research Methods

MDiNE: a model to estimate differential co-occurrence networks in microbiome studies

Kevin McGregor et al.

BIOINFORMATICS (2020)

Article Plant Sciences

Regulation of Sugar and Storage Oil Metabolism by Phytochrome during De-etiolation

Toshiaki Kozuka et al.

PLANT PHYSIOLOGY (2020)

Article Environmental Sciences

Host identity determines plant associated resistomes

Qing-Lin Chen et al.

ENVIRONMENTAL POLLUTION (2020)

Review Gastroenterology & Hepatology

Gut microbiota-derived metabolites as key actors in inflammatory bowel disease

Aonghus Lavelle et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2020)

Article Multidisciplinary Sciences

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

Elisa Korenblum et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Plant Sciences

Allelopathic Plants: Models for Studying Plant-Interkingdom Interactions

Niklas Schandry et al.

TRENDS IN PLANT SCIENCE (2020)

Review Plant Sciences

A Model for Nitrogen Fixation in Cereal Crops

Alan B. Bennett et al.

TRENDS IN PLANT SCIENCE (2020)

Editorial Material Plant Sciences

Promoting Model Systems of Microbiota-Medicinal Plant Interactions

Valentina Maggini et al.

TRENDS IN PLANT SCIENCE (2020)

Review Environmental Sciences

The role of rhizodeposits in shaping rhizomicrobiome

Tao Tian et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2020)

Article Microbiology

Spatial metabolomics of in situ host-microbe interactions at the micrometre scale

Benedikt Geier et al.

NATURE MICROBIOLOGY (2020)

Article Microbiology

Visualizing Microbial Community Dynamics via a Controllable Soil Environment

Arunima Bhattacharjee et al.

MSYSTEMS (2020)

Article Biochemical Research Methods

M2IA: a web server for microbiome and metabolome integrative analysis

Yan Ni et al.

BIOINFORMATICS (2020)

Article Biochemistry & Molecular Biology

A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors

Ina Nemet et al.

Article Plant Sciences

Jasmonic Acid, Not Salicyclic Acid Restricts Endophytic Root Colonization of Rice

Xi Chen et al.

FRONTIERS IN PLANT SCIENCE (2020)

Article Plant Sciences

Plant surface metabolites as potent antifungal agents

Olga Dubey et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2020)

Review Multidisciplinary Sciences

Harnessing rhizosphere microbiomes for drought-resilient crop production

Franciska T. de Vries et al.

SCIENCE (2020)

Review Plant Sciences

Microbiome-Mediated Stress Resistance in Plants

Hongwei Liu et al.

TRENDS IN PLANT SCIENCE (2020)

Article Plant Sciences

Functional Imaging of Microbial Interactions With Tree Roots Using a Microfluidics Setup

Marie-Francoise Noirot-Gros et al.

FRONTIERS IN PLANT SCIENCE (2020)

Article Biotechnology & Applied Microbiology

Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery

Zehra Esra Ilhan et al.

NPJ BIOFILMS AND MICROBIOMES (2020)

Review Plant Sciences

More is better: the diversity of terpene metabolism in plants

Fei Zhou et al.

CURRENT OPINION IN PLANT BIOLOGY (2020)

Review Plant Sciences

Towards a functional understanding of the plant metabolome

Monika Kosmacz et al.

CURRENT OPINION IN PLANT BIOLOGY (2020)

Article Multidisciplinary Sciences

A single bacterial genus maintains root growth in a complex microbiome

Omri M. Finkel et al.

NATURE (2020)

Editorial Material Plant Sciences

Does Karrikin Signaling Shape the Rhizomicrobiome via the Strigolactone Biosynthetic Pathway?

Fahad Nasir et al.

TRENDS IN PLANT SCIENCE (2020)

Review Medicine, General & Internal

Metabolome analysis for investigating host-gut microbiota interactions

Michael X. Chen et al.

JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION (2019)

Article Ecology

Metabolic regulation of the maize rhizobiome by benzoxazinoids

T. E. Anne Cotton et al.

ISME JOURNAL (2019)

Editorial Material Plant Sciences

Plant Defense by VOC-Induced Microbial Priming

Hongwei Liu et al.

TRENDS IN PLANT SCIENCE (2019)

Review Multidisciplinary Sciences

The soybean rhizosphere: Metabolites, microbes, and beyond-A review

Akifumi Sugiyama

JOURNAL OF ADVANCED RESEARCH (2019)

Review Multidisciplinary Sciences

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

Stephane Compant et al.

JOURNAL OF ADVANCED RESEARCH (2019)

Review Multidisciplinary Sciences

Driving factors of epiphytic bacterial communities: A review

Rudolf O. Schlechter et al.

JOURNAL OF ADVANCED RESEARCH (2019)

Article Biotechnology & Applied Microbiology

Bacterial and Fungal Endophytic Microbiomes of Salicornia europaea

Bliss Ursula Furtado et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Systems Biology of Plant-Microbiome Interactions

Patricia A. Rodriguez et al.

MOLECULAR PLANT (2019)

Article Biotechnology & Applied Microbiology

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

Jingying Zhang et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemistry & Molecular Biology

Natural fumigation as a mechanism for volatile transport between flower organs

Benoit Boachon et al.

NATURE CHEMICAL BIOLOGY (2019)

Review Agronomy

Phytobiome metabolism: beneficial soil microbes steer crop plants' secondary metabolism

Elisa Korenblum et al.

PEST MANAGEMENT SCIENCE (2019)

Review Plant Sciences

The Age of Coumarins in Plant-Microbe Interactions

Ioannis A. Stringlis et al.

PLANT AND CELL PHYSIOLOGY (2019)

Article Multidisciplinary Sciences

A specialized metabolic network selectively modulates Arabidopsis root microbiota

Ancheng C. Huang et al.

SCIENCE (2019)

Article Microbiology

Maize synthesized benzoxazinoids affect the host associated microbiome

Enoch Narh Kudjordjie et al.

MICROBIOME (2019)

Article Biochemical Research Methods

iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis

Teresia M. Buza et al.

BMC BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Biotransformation of Huperzine B by a Fungal Endophyte of Huperzia serrata

Zha-Jun Zhan et al.

CHEMISTRY & BIODIVERSITY (2019)

Review Agronomy

Role and exploitation of underground chemical signaling in plants

Alessandra Guerrieri et al.

PEST MANAGEMENT SCIENCE (2019)

Article Multidisciplinary Sciences

Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains

Anna Koprivova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

Mathias J. E. E. E. Voges et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Editorial Material Biology

Plant specialized metabolites modulate root microbiomes

Pengchao Wang et al.

SCIENCE CHINA-LIFE SCIENCES (2019)

Article Multidisciplinary Sciences

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

Himel Mallick et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

The influence of Echinacea purpurea leaf microbiota on chicoric acid level

Valentina Maggini et al.

SCIENTIFIC REPORTS (2019)

Article Ecology

Conversions of Benzoxazinoids and Downstream Metabolites by Soil Microorganisms

Vadim Schuetz et al.

FRONTIERS IN ECOLOGY AND EVOLUTION (2019)

Review Microbiology

Plant-Microbe Interactions Facing Environmental Challenge

Yu Ti Cheng et al.

CELL HOST & MICROBE (2019)

Article Biochemistry & Molecular Biology

Strigolactones shape the rhizomicrobiome in rice (Oryza sativa)

Fahad Nasir et al.

PLANT SCIENCE (2019)

Article Environmental Sciences

Enrichment of soil rare bacteria in root by an invasive plant Ageratina adenophora

Lin Chen et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Article Chemistry, Analytical

Strategy for Intercorrelation Identification between Metabolome and Microbiome

Dandan Liang et al.

ANALYTICAL CHEMISTRY (2019)

Article Biochemical Research Methods

Learning representations of microbe-metabolite interactions

James T. Morton et al.

NATURE METHODS (2019)

Article Multidisciplinary Sciences

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

Victor J. Carrion et al.

SCIENCE (2019)

Article Microbiology

Patterns of PCR Amplification Artifacts of the Fungal Barcode Marker in a Hybrid Mushroom

Jun-Liang Zhou et al.

FRONTIERS IN MICROBIOLOGY (2019)

Review Plant Sciences

A Bioinformatics Guide to Plant Microbiome Analysis

Rares Lucaciu et al.

FRONTIERS IN PLANT SCIENCE (2019)

Review Microbiology

Mycobiome diversity: high-throughput sequencing and identification of fungi

R. Henrik Nilsson et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Review Plant Sciences

Comprehensive review of antimicrobial activities of plant flavonoids

Ireneusz Gorniak et al.

PHYTOCHEMISTRY REVIEWS (2019)

Review Plant Sciences

Exploring the Diversity of Plant Metabolism

Chuanying Fang et al.

TRENDS IN PLANT SCIENCE (2019)

Article Multidisciplinary Sciences

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Nelle Varoquaux et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Review Microbiology

Tracing the evolutionary routes of plant-microbiota interactions

Carmen Escudero-Martinez et al.

CURRENT OPINION IN MICROBIOLOGY (2019)

Review Microbiology

Reductionist synthetic community approaches in root microbiome research

Yong-Xin Liu et al.

CURRENT OPINION IN MICROBIOLOGY (2019)

Review Microbiology

Harnessing the microbiome to control plant parasitic weeds

Raul Masteling et al.

CURRENT OPINION IN MICROBIOLOGY (2019)

Editorial Material Biochemistry & Molecular Biology

The Soil-Borne Legacy

Peter A. H. M. Bakker et al.

Article Biochemistry & Molecular Biology

Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

Haimin Chen et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Ecology

Calling from distance: attraction of soil bacteria by plant root volatiles

Kristin Schulz-Bohm et al.

ISME JOURNAL (2018)

Review Ecology

Plant Secondary Metabolite Diversity and Species Interactions

Andre Kessler et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (2018)

Review Biochemistry & Molecular Biology

Response of Plant Secondary Metabolites to Environmental Factors

Li Yang et al.

MOLECULES (2018)

Article Biochemistry & Molecular Biology

Biosynthesis of redox-active metabolites in response to iron deficiency in plants

Jakub Rajniak et al.

NATURE CHEMICAL BIOLOGY (2018)

Correction Multidisciplinary Sciences

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria (vol 115, pg E4284, 2018)

Ling Xu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

Ioannis A. Stringlis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Editorial Material Multidisciplinary Sciences

Root-exuded coumarin shapes the root microbiome

Derek S. Lundberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Plant Sciences

Strigolactones as Regulators of Symbiotrophy of Plants and Microorganisms

O. Yu. Shtark et al.

RUSSIAN JOURNAL OF PLANT PHYSIOLOGY (2018)

Article Soil Science

Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale

Baogang Zhang et al.

SOIL BIOLOGY & BIOCHEMISTRY (2018)

Editorial Material Plant Sciences

Roles of Plant-Associated Microbiota in Traditional Herbal Medicine

Weijuan Huang et al.

TRENDS IN PLANT SCIENCE (2018)

Review Plant Sciences

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

Joelle Sasse et al.

TRENDS IN PLANT SCIENCE (2018)

Article Biochemistry & Molecular Biology

Design of synthetic bacterial communities for predictable plant phenotypes

Sur Herrera Paredes et al.

PLOS BIOLOGY (2018)

Review Plant Sciences

Drought Stress and Root-Associated Bacterial Communities

Dan Naylor et al.

FRONTIERS IN PLANT SCIENCE (2018)

Review Plant Sciences

Ethylene and 1-Aminocyclopropane-1-carboxylate (ACC) in Plant-Bacterial Interactions

Francisco X. Nascimento et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Multidisciplinary Sciences

Plant neighbor detection and allelochemical response are driven by root-secreted signaling chemicals

Chui-Hua Kong et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Root exudate metabolomes change under drought and show limited capacity for recovery

Albert Gargallo-Garriga et al.

SCIENTIFIC REPORTS (2018)

Article Biochemistry & Molecular Biology

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota

Allen Van Deynze et al.

PLOS BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

Paloma Duran et al.

Article Biochemistry & Molecular Biology

Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1

Ara Koh et al.

Article Biochemical Research Methods

bioBakery: a meta'omic analysis environment

Lauren J. McIver et al.

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Stefania Magnusdottir et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

Epiphytic Bacteria Alter Floral Scent Emissions

Carola Helletsgruber et al.

JOURNAL OF CHEMICAL ECOLOGY (2017)

Article Automation & Control Systems

Common and distinct components in data fusion

Age K. Smilde et al.

JOURNAL OF CHEMOMETRICS (2017)

Article Multidisciplinary Sciences

Root microbiota drive direct integration of phosphate stress and immunity

Gabriel Castrillo et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

Achal Dhariwal et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Plant Sciences

Metabolite profiling of non-sterile rhizosphere soil

Pierre Petriacq et al.

PLANT JOURNAL (2017)

Article Plant Sciences

Bacterial Biosensors for in Vivo Spatiotemporal Mapping of Root Secretion

Francesco Pini et al.

PLANT PHYSIOLOGY (2017)

Article Multidisciplinary Sciences

Live imaging of root-bacteria interactions in a microfluidics setup

Hassan Massalha et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Alleviation of drought stress by mycorrhizas is related to increased root H2O2 efflux in trifoliate orange

Yong-Ming Huang et al.

SCIENTIFIC REPORTS (2017)

Article Multidisciplinary Sciences

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

Hongwei Liu et al.

SCIENTIFIC REPORTS (2017)

Review Microbiology

Jasmonic acid signalling and the plant holobiont

Lilia C. Carvalhais et al.

CURRENT OPINION IN MICROBIOLOGY (2017)

Article Biochemical Research Methods

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

Diego C. B. Mariano et al.

BMC BIOINFORMATICS (2016)

Article Biochemical Research Methods

Separating common from distinctive variation

Frans M. van der Kloet et al.

BMC BIOINFORMATICS (2016)

Article Biochemical Research Methods

MMinte: an application for predicting metabolic interactions among the microbial species in a community

Helena Mendes-Soares et al.

BMC BIOINFORMATICS (2016)

Article Biochemical Research Methods

Optimization of large-scale pseudotargeted metabolomics method based on liquid chromatography-mass spectrometry

Ping Luo et al.

JOURNAL OF CHROMATOGRAPHY A (2016)

Article Plant Sciences

Systemic enrichment of antifungal traits in the rhizosphere microbiome after pathogen attack

Jan-Hendrik Dudenhoeffer et al.

JOURNAL OF ECOLOGY (2016)

Review Microbiology

The ecology and biogeochemistry of stream biofilms

Tom J. Battin et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Root exudates drive interspecific facilitation by enhancing nodulation and N2 fixation

Bai Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Plant Sciences

Bidirectional Interaction between Phyllospheric Microbiotas and Plant Volatile Emissions

Gerard Farre-Armengol et al.

TRENDS IN PLANT SCIENCE (2016)

Review Plant Sciences

Signaling in the Rhizosphere

Vittorio Venturi et al.

TRENDS IN PLANT SCIENCE (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

PEERJ (2016)

Article Biochemical Research Methods

CCLasso: correlation inference for compositional data through Lasso

Huaying Fang et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Error filtering, pair assembly and error correction for next-generation sequencing reads

Robert C. Edgar et al.

BIOINFORMATICS (2015)

Article Microbiology

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

Davide Bulgarelli et al.

CELL HOST & MICROBE (2015)

Article Biochemistry & Molecular Biology

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

Lilia C. Carvalhais et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2015)

Article Plant Sciences

Ethylene: Traffic Controller on Hormonal Crossroads to Defense

Colette Broekgaarden et al.

PLANT PHYSIOLOGY (2015)

Article Multidisciplinary Sciences

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

Sarah L. Lebeis et al.

SCIENCE (2015)

Article Biochemical Research Methods

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

Zachary D. Kurtz et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemical Research Methods

Proportionality: A Valid Alternative to Correlation for Relative Data

David Lovell et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Soil Science

Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix

Lilia C. Carvalhais et al.

APPLIED SOIL ECOLOGY (2014)

Article Microbiology

The Treatment-Naive Microbiome in New-Onset Crohn's Disease

Dirk Gevers et al.

CELL HOST & MICROBE (2014)

Review Biochemical Research Methods

Metabolic potential of endophytic bacteria

Guenter Brader et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Review Biochemistry & Molecular Biology

The impact of microbial symbionts on host plant utilization by herbivorous insects

Allison K. Hansen et al.

MOLECULAR ECOLOGY (2014)

Review Biotechnology & Applied Microbiology

Flavonoids in plant rhizospheres: secretion, fate and their effects on biological communication

Akifumi Sugiyama et al.

PLANT BIOTECHNOLOGY (2014)

Article Multidisciplinary Sciences

Removal of floral microbiota reduces floral terpene emissions

Josep Penuelas et al.

SCIENTIFIC REPORTS (2014)

Article Genetics & Heredity

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

Natacha Bodenhausen et al.

PLOS GENETICS (2014)

Article Statistics & Probability

JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES

Eric F. Lock et al.

ANNALS OF APPLIED STATISTICS (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

Sharon Greenblum et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

Microbial Co-occurrence Relationships in the Human Microbiome

Karoline Faust et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Inferring Correlation Networks from Genomic Survey Data

Jonathan Friedman et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Plant Sciences

Benzoxazinoid Metabolites Regulate Innate Immunity against Aphids and Fungi in Maize

Shakoor Ahmad et al.

PLANT PHYSIOLOGY (2011)

Article Multidisciplinary Sciences

Detecting Novel Associations in Large Data Sets

David N. Reshef et al.

SCIENCE (2011)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Review Biotechnology & Applied Microbiology

Bacterial volatiles and their action potential

Marco Kai et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2009)

Review Biochemistry & Molecular Biology

The role of microbial signals in plant growth and development

Randy Ortiz-Castro et al.

PLANT SIGNALING & BEHAVIOR (2009)