Related references
Note: Only part of the references are listed.Hybridization and introgression drive genome evolution of Dutch elm disease pathogens
Pauline Hessenauer et al.
NATURE ECOLOGY & EVOLUTION (2020)
Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen
Jo Anne Crouch et al.
PHYTOPATHOLOGY (2020)
Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans
Brian J. Knaus et al.
MBIO (2020)
Genome evolution in fungal plant pathogens: looking beyond the two-speed genome model
David E. Torres et al.
Fungal Biology Reviews (2020)
Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria
Lea Stauber et al.
MSPHERE (2020)
Is there evidence for post-epidemic attenuation in the Dutch elm disease pathogen Ophiostoma novo-ulmi?
C. M. Brasier et al.
PLANT PATHOLOGY (2019)
A multiplexed genotyping assay to determine vegetative incompatibility and mating type in Cryphonectria parasitica
C. Cornejo et al.
EUROPEAN JOURNAL OF PLANT PATHOLOGY (2019)
Characterisation and pathogenicity of Cryphonectria parasitica on sweet chestnut and sessile oak trees in Serbia
Dragan Karadzic et al.
PLANT PROTECTION SCIENCE (2019)
Link between epigenetic diversity and invasive status of south-eastern European populations of phytopathogenic fungus Cryphonectria parasitica
Rosemary Vukovic et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Whole-genome sequencing reveals recent and frequent genetic recombination between clonal lineages of Cryphonectria parasitica in western Europe
Arthur Demene et al.
FUNGAL GENETICS AND BIOLOGY (2019)
The need for speed: compartmentalized genome evolution in filamentous phytopathogens
Lamprinos Frantzeskakis et al.
MOLECULAR PLANT PATHOLOGY (2019)
Cryphonectria parasitica, the causal agent of chestnut blight: invasion history, population biology and disease control
Daniel Rigling et al.
MOLECULAR PLANT PATHOLOGY (2018)
The birth and death of effectors in rapidly evolving filamentous pathogen genomes
Simone Fouche et al.
CURRENT OPINION IN MICROBIOLOGY (2018)
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
Jana Sperschneider et al.
MOLECULAR PLANT PATHOLOGY (2018)
Recurrent bridgehead effects accelerate global alien ant spread
Cleo Bertelsmeier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Bridgehead Effects and Role of Adaptive Evolution in Invasive Populations
Cleo Bertelsmeier et al.
TRENDS IN ECOLOGY & EVOLUTION (2018)
Supervised Multiblock Analysis in R with the ade4 Package
Stephanie Bougeard et al.
JOURNAL OF STATISTICAL SOFTWARE (2018)
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors
Nikolaos Alachiotis et al.
COMMUNICATIONS BIOLOGY (2018)
VCFR: a package to manipulate and visualize variant call format data in R
Brian J. Knaus et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Multiple introductions, admixture and bridgehead invasion characterize the introduction history of Ambrosia artemisiifolia in Europe and Australia
Lotte A. van Boheemen et al.
MOLECULAR ECOLOGY (2017)
Genetic Variation in Native Populations of the Laurel Wilt Pathogen, Raffaelea lauricola, in Taiwan and Japan and the Introduced Population in the United States
Caroline E. Wuest et al.
PLANT DISEASE (2017)
Effects of Host Variability on the Spread of Invasive Forest Diseases
Simone Prospero et al.
FORESTS (2017)
CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations
Xihong Wang et al.
GIGASCIENCE (2017)
Phenotypic and genotypic changes in French populations of Phytophthora infestans: are invasive clones the most aggressive?
N. Mariette et al.
PLANT PATHOLOGY (2016)
BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data
Vagheesh Narasimhan et al.
BIOINFORMATICS (2016)
Complex patterns of global spread in invasive insects: eco-evolutionary and management consequences
Jeff R. Garnas et al.
BIOLOGICAL INVASIONS (2016)
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest
Jacob L. Steenwyk et al.
BMC GENOMICS (2016)
The two-speed genomes of filamentous pathogens: waltz with plants
Suomeng Dong et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
The population biology of fungal invasions
P. Gladieux et al.
MOLECULAR ECOLOGY (2015)
What we still don't know about invasion genetics
Dan G. Bock et al.
MOLECULAR ECOLOGY (2015)
Clonal reproduction in fungi
John W. Taylor et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
An increase in transmission-related traits and in phenotypic plasticity is documented during a fungal invasion
Matteo Garbelotto et al.
ECOSPHERE (2015)
Contrasted patterns in mating-type chromosomes in fungi: Hotspots versus coldspots of recombination
Alexander Idnurm et al.
FUNGAL BIOLOGY REVIEWS (2015)
Assembly rules of ectoparasite communities across scales: combining patterns of abiotic factors, host composition, geographic space, phylogeny and traits
Boris R. Krasnov et al.
ECOGRAPHY (2015)
The role of global trade and transport network topology in the human-mediated dispersal of alien species
Natalie Clare Banks et al.
ECOLOGY LETTERS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
History of the invasion of the anther smut pathogen on Silene latifolia in North America
Michael C. Fontaine et al.
NEW PHYTOLOGIST (2013)
Biogeographical patterns and determinants of invasion by forest pathogens in Europe
A. Santini et al.
NEW PHYTOLOGIST (2013)
Global Genetics and Invasion History of the Potato Powdery Scab Pathogen, Spongospora subterranea f.sp subterranea
Rebecca D. Gau et al.
PLOS ONE (2013)
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
H. E. L. Lischer et al.
BIOINFORMATICS (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Sex, outcrossing and mating types: unsolved questions in fungi and beyond
S. Billiard et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2012)
High diversity in populations of the introduced plant pathogen, Cryphonectria parasitica, due to encounters between genetically divergent genotypes
Marin Jezic et al.
MOLECULAR ECOLOGY (2012)
The chestnut blight fungus world tour: successive introduction events from diverse origins in an invasive plant fungal pathogen
C. Dutech et al.
MOLECULAR ECOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Hypovirus Virulence and Vegetative Incompatibility in Populations of the Chestnut Blight Fungus
Sarah Franziska Bryner et al.
PHYTOPATHOLOGY (2012)
Invasion Genetics of the Chestnut Blight Fungus Cryphonectria parasitica in Switzerland
S. Prospero et al.
PHYTOPATHOLOGY (2012)
Invasion Genetics of the Western Flower Thrips in China: Evidence for Genetic Bottleneck, Hybridization and Bridgehead Effect
Xian-Ming Yang et al.
PLOS ONE (2012)
Emergence of the sudden oak death pathogen Phytophthora ramorum
Niklaus J. Gruenwald et al.
TRENDS IN MICROBIOLOGY (2012)
Inference of Population Structure using Dense Haplotype Data
Daniel John Lawson et al.
PLOS GENETICS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Clonal population structure and introductions of the chestnut blight fungus, Cryphonectria parasitica, in Asturias, northern Spain
German Gonzalez-Varela et al.
EUROPEAN JOURNAL OF PLANT PATHOLOGY (2011)
Predicting invasion success of forest pathogenic fungi from species traits
Aurore Philibert et al.
JOURNAL OF APPLIED ECOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Fitness-Associated Sexual Reproduction in a Filamentous Fungus
Sijmen Schoustra et al.
CURRENT BIOLOGY (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Multiple introductions of divergent genetic lineages in an invasive fungal pathogen, Cryphonectria parasitica, in France
C. Dutech et al.
HEREDITY (2010)
Bridgehead Effect in the Worldwide Invasion of the Biocontrol Harlequin Ladybird
Eric Lombaert et al.
PLOS ONE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
Ryan N. Gutenkunst et al.
PLOS GENETICS (2009)
Host-specific toxins: effectors of necrotrophic pathogenicity
Timothy L. Friesen et al.
CELLULAR MICROBIOLOGY (2008)
Clonal population structure of the chestnut blight fungus in expanding ranges in southeastern Europe
Michael G. Milgroom et al.
MOLECULAR ECOLOGY (2008)
Long-term changes in forest composition and diversity following early logging (1919-1923) and the decline of American chestnut (Castanea dentata)
Katherine J. Elliott et al.
PLANT ECOLOGY (2008)
Are there any consistent predictors of invasion success?
Keith R. Hayes et al.
BIOLOGICAL INVASIONS (2008)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury et al.
BIOINFORMATICS (2007)
Evidence for the dispersal of a unique lineage from Asia to America and Africa in the sugarcane fungal pathogen Ustilago scitaminea
Louis-Marie Raboin et al.
FUNGAL GENETICS AND BIOLOGY (2007)
Saprophytic activity and sporulation of Cryphonectria parasitica on dead chestnut wood in forests with naturally established hypovirulence
S. Prospero et al.
PHYTOPATHOLOGY (2006)
A simple and robust statistical test for detecting the presence of recombination
TC Bruen et al.
GENETICS (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novo-ulmi
M Paoletti et al.
MOLECULAR ECOLOGY (2006)
Mixed mating in natural populations of the chestnut blight fungus, Cryphonectria parasitica
RE Marra et al.
HEREDITY (2004)
Invasion dynamics of two alien Carpobrotus (Aizoaceae) taxa on a Mediterranean island:: II.: Reproductive strategies
CM Suehs et al.
HEREDITY (2004)
Low diversity of vegetative compatibility types and mating type of Cryphonectria parasitica in the southern Balkans
K Sotirovski et al.
PLANT PATHOLOGY (2004)
Generating samples under a Wright-Fisher neutral model of genetic variation
RR Hudson
BIOINFORMATICS (2002)
The mating system of the fungus Cryphonectria parasitica:: selfing and self-incompatibility
RE Marra et al.
HEREDITY (2001)
Genetic structure of newly established populations of Cryphonectria parasitica
PJ Hoegger et al.
MYCOLOGICAL RESEARCH (2000)