Related references
Note: Only part of the references are listed.Single-molecule tracking reveals that the nucleoid-associated protein HU plays a dual role in maintaining proper nucleoid volume through differential interactions with chromosomal DNA
Kelsey Bettridge et al.
MOLECULAR MICROBIOLOGY (2021)
RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles
Sahar Melamed et al.
MOLECULAR CELL (2020)
Crystal structure of an Escherichia coil Hfq Core ( residues 2-69)-DNA complex reveals multifunctiona nucleic acid binding sites
Jillian Orans et al.
NUCLEIC ACIDS RESEARCH (2020)
Hfq and RNase R Mediate rRNA Processing and Degradation in a Novel RNA Quality Control Process
Ricardo F. dos Santos et al.
MBIO (2020)
Architectural principles for Hfq/Crc-mediated regulation of gene expression
Xue Yuan Pei et al.
ELIFE (2019)
Spatiotemporal Organization of the E. coli Transcriptome: Translation Independence and Engagement in Regulation
Shanmugapriya Kannaiah et al.
MOLECULAR CELL (2019)
In vivo DNA assembly using common laboratory bacteria: A re-emerging tool to simplify molecular cloning
Jake F. Watson et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2019)
Analysis of the natively unstructured RNA/protein-recognition core in the Escherichia coli RNA degradosome and its interactions with regulatory RNA/Hfq complexes
Heather A. Bruce et al.
NUCLEIC ACIDS RESEARCH (2018)
The RNA-binding protein Hfq is important for ribosome biogenesis and affects translation fidelity
Jose M. Andrade et al.
EMBO JOURNAL (2018)
Engineered synthetic antibodies as probes to quantify the energetic contributions of ligand binding to conformational changes in proteins
Somnath Mukherjee et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Revised role for Hfq bacterial regulator on DNA topology
Antoine Malabirade et al.
SCIENTIFIC REPORTS (2018)
Conducting Multiple Imaging Modes with One Fluorescence Microscope
Seongjin Park et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2018)
Anomalous, non-Gaussian, viscoelastic, and age-dependent dynamics of histonelike nucleoid-structuring proteins in live Escherichia coli
Asmaa A. Sadoon et al.
PHYSICAL REVIEW E (2018)
An Automated Image Analysis Method for Segmenting Fluorescent Bacteria in Three Dimensions
Matthew A. Reyer et al.
BIOCHEMISTRY (2018)
Transfer RNA is highly unstable during early amino acid starvation in Escherichia coli
Sine Lo Svenningsen et al.
NUCLEIC ACIDS RESEARCH (2017)
In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways
Yanjie Chao et al.
MOLECULAR CELL (2017)
Hfq: the flexible RNA matchmaker
Taylor B. Updegrove et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
Global Mapping of Small RNA-Target Interactions in Bacteria
Sahar Melamed et al.
MOLECULAR CELL (2016)
C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA
Andrew Santiago-Frangos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Spatial organization shapes the turnover of a bacterial transcriptome
Jeffrey R. Moffitt et al.
ELIFE (2016)
Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition
Daniel J. Schu et al.
EMBO JOURNAL (2015)
Optimization of Droplet Digital PCR from RNA and DNA extracts with direct comparison to RT-qPCR: Clinical implications for quantification of Oseltamivir-resistant subpopulations
Sean C. Taylor et al.
JOURNAL OF VIROLOGICAL METHODS (2015)
Hfq binds directly to the ribosome- binding site of IS10 transposase mRNA to inhibit translation
Michael J. Ellis et al.
MOLECULAR MICROBIOLOGY (2015)
Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli
Huiyi Chen et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Determination of in vivo target search kinetics of regulatory noncoding RNA
Jingyi Fei et al.
SCIENCE (2015)
The Escherichia coli RNA processing and degradation machinery is compartmentalized within an organized cellular network
Aziz Taghbalout et al.
BIOCHEMICAL JOURNAL (2014)
A Protein-Tagging System for Signal Amplification in Gene Expression and Fluorescence Imaging
Marvin E. Tanenbaum et al.
CELL (2014)
Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli
Jai J. Tree et al.
MOLECULAR CELL (2014)
Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
Kirsten E. Robinson et al.
NUCLEIC ACIDS RESEARCH (2014)
NAR Breakthrough Article Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli
Justin E. Clarke et al.
NUCLEIC ACIDS RESEARCH (2014)
Structural model of an mRNA in complex with the bacterial chaperone Hfq
Yi Peng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging
Siyuan Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Recognition of the small regulatory RNA RydC by the bacterial Hfq protein
Daniela Dimastrogiovanni et al.
ELIFE (2014)
Hfq binds ribonucleotides in three different RNA-binding sites
Victoria Murina et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)
Mutations in Interaction Surfaces Differentially Impact E. coli Hfq Association with Small RNAs and Their mRNA Targets
Aixia Zhang et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Extracting intracellular diffusive states and transition rates from single-molecule tracking data
Fredrik Persson et al.
NATURE METHODS (2013)
Cycling of RNAs on Hfq
E. Gerhart H. Wagner
RNA BIOLOGY (2013)
The bacterial protein Hfq: much more than a mere RNA-binding factor
Patricio Sobrero et al.
CRITICAL REVIEWS IN MICROBIOLOGY (2012)
An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
Yanjie Chao et al.
EMBO JOURNAL (2012)
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
Guillaume Desnoyers et al.
GENES & DEVELOPMENT (2012)
The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E
Katarzyna J. Bandyra et al.
MOLECULAR CELL (2012)
Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Tatsuhiko Someya et al.
NUCLEIC ACIDS RESEARCH (2012)
Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract
Nicola Horstmann et al.
NUCLEIC ACIDS RESEARCH (2012)
Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY
Nilshad N. Salim et al.
NUCLEIC ACIDS RESEARCH (2012)
Despite Similar Binding to the Hfq Protein Regulatory RNAs Widely Differ in Their Competition Performance
Mikolaj Olejniczak
BIOCHEMISTRY (2011)
Macromolecule diffusion and confinement in prokaryotic cells
Jacek T. Mika et al.
CURRENT OPINION IN BIOTECHNOLOGY (2011)
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
Karine Prevost et al.
GENES & DEVELOPMENT (2011)
Regulation by Small RNAs in Bacteria: Expanding Frontiers
Gisela Storz et al.
MOLECULAR CELL (2011)
Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
Yoshiki Ikeda et al.
MOLECULAR MICROBIOLOGY (2011)
Hfq and its constellation of RNA
Joerg Vogel et al.
NATURE REVIEWS MICROBIOLOGY (2011)
RNAs actively cycle on the Sm-like protein Hfq
Aurelie Fender et al.
GENES & DEVELOPMENT (2010)
An Upstream Hfq Binding Site in the fhlA mRNA Leader Region Facilitates the OxyS-fhlA Interaction
Nilshad N. Salim et al.
PLOS ONE (2010)
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
Guillaume Desnoyers et al.
EMBO JOURNAL (2009)
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Verena Pfeiffer et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Cellular Electron Microscopy Imaging Reveals the Localization of the Hfq Protein Close to the Bacterial Membrane
Elia Diestra et al.
PLOS ONE (2009)
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
Todd M. Link et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome
Jonathan A. R. Worrall et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal
Atilio Deana et al.
NATURE (2008)
High-density mapping of single-molecule trajectories with photoactivated localization microscopy
Suliana Manley et al.
NATURE METHODS (2008)
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation
Johannes H. Urban et al.
PLOS BIOLOGY (2008)
Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq
Alexandra Sittka et al.
PLOS GENETICS (2008)
Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal
Helena Celesnik et al.
MOLECULAR CELL (2007)
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
Karine Prevost et al.
MOLECULAR MICROBIOLOGY (2007)
Hfq structure, function and ligand binding
Richard G. Brennan et al.
CURRENT OPINION IN MICROBIOLOGY (2007)
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
T Morita et al.
GENES & DEVELOPMENT (2005)
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
T Afonyushkin et al.
NUCLEIC ACIDS RESEARCH (2005)
Catalytic activation of multimeric RNase E and RNase G by 5′-monophosphorylated RNA
XQ Jiang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
BK Mohanty et al.
MOLECULAR MICROBIOLOGY (2004)
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
J Vogel et al.
NUCLEIC ACIDS RESEARCH (2003)
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
E Massé et al.
GENES & DEVELOPMENT (2003)
Function in Escherichia coli of the non-catalytic part of RNase E:: role in the degradationof ribosome-free mRNA
A Leroy et al.
MOLECULAR MICROBIOLOGY (2002)
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
AX Zhang et al.
MOLECULAR CELL (2002)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I
E Hajnsdorf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)