Related references
Note: Only part of the references are listed.ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution
Chuan Tian et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2020)
The Structural Basis for Low Conductance in the Membrane Protein VDAC upon β-NADH Binding and Voltage Gating
Raphael Boehm et al.
STRUCTURE (2020)
Developing a molecular dynamics force field for both folded and disordered protein states
Paul Robustelli et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
VDAC1 as Pharmacological Target in Cancer and Neurodegeneration: Focus on Its Role in Apoptosis
Andrea Magri et al.
FRONTIERS IN CHEMISTRY (2018)
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
Jing Huang et al.
NATURE METHODS (2017)
VDAC1 at the crossroads of cell metabolism, apoptosis and cell stress
Varda Shoshan-Barmatz et al.
CELL STRESS (2017)
Current state of theoretical and experimental studies of the voltage-dependent anion channel (VDAC)
Sergei Yu. Noskov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2016)
Voltage Dependence of Conformational Dynamics and Subconducting States of VDAC-1
Rodolfo Briones et al.
BIOPHYSICAL JOURNAL (2016)
The N-Terminal Peptides of the Three Human Isoforms of the Mitochondrial Voltage-Dependent Anion Channel Have Different Helical Propensities
Carlo Guardiani et al.
BIOCHEMISTRY (2015)
Balanced Protein Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association (vol 10, pg 5113, 2014)
Robert B. Best et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James A. Maier et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
New Force Field on Modeling Intrinsically Disordered Proteins
Wei Wang et al.
CHEMICAL BIOLOGY & DRUG DESIGN (2014)
Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation
Yinglong Miao et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)
Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1
Om P. Choudhary et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Charged Residues Distribution Modulates Selectivity of the Open State of Human Isoforms of the Voltage Dependent Anion-Selective Channel
Giuseppe Federico Amodeo et al.
PLOS ONE (2014)
Lipids of mitochondria
Susanne E. Horvath et al.
PROGRESS IN LIPID RESEARCH (2013)
VDAC inhibition by tubulin and its physiological implications
Tatiana K. Rostovtseva et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)
VDAC structure, selectivity, and dynamics
Marco Colombini
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)
ESpritz: accurate and fast prediction of protein disorder
Ian Walsh et al.
BIOINFORMATICS (2012)
Structure-based Analysis of VDAC1 Protein DEFINING OLIGOMER CONTACT SITES
Shay Geula et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Affixing N-terminal α-Helix to the Wall of the Voltage-dependent Anion Channel Does Not Prevent Its Voltage Gating
Oscar Teijido et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics
Levi C. T. Pierce et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Web interface for brownian dynamics simulation of ion transport and its applications to beta-barrel pores
Kyu Il Lee et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2012)
OPM database and PPM web server: resources for positioning of proteins in membranes
Mikhail A. Lomize et al.
NUCLEIC ACIDS RESEARCH (2012)
Flexibility of the N-Terminal mVDAC1 Segment Controls the Channel's Gating Behavior
Barbara Mertins et al.
PLOS ONE (2012)
β-Barrel Mobility Underlies Closure of the Voltage-Dependent Anion Channel
Ulrich Zachariae et al.
STRUCTURE (2012)
Molecular Dynamics Studies of Ion Permeation in VDAC
Huan Rui et al.
BIOPHYSICAL JOURNAL (2011)
Enhanced Lipid Diffusion and Mixing in Accelerated Molecular Dynamics
Yi Wang et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
The Native Conformation of the Human VDAC1 N Terminus
Robert Schneider et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)
SPARTA plus : a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network
Yang Shen et al.
JOURNAL OF BIOMOLECULAR NMR (2010)
VDAC, a multi-functional mitochondrial protein regulating cell life and death
Varda Shoshan-Barmatz et al.
MOLECULAR ASPECTS OF MEDICINE (2010)
Functional dynamics in the voltage-dependent anion channel
Saskia Villinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Linking folding and binding
Peter E. Wright et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
Structure of the human voltage-dependent anion channel
Monika Bayrhuber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
The crystal structure of mouse VDAC1 at 2.3 Å resolution reveals mechanistic insights into metabolite gating
Rachna Ujwal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Solution structure of the integral human membrane protein VDAC-1 in detergent micelles
Sebastian Hiller et al.
SCIENCE (2008)
Molecular principles of the interactions of disordered proteins
Balint Meszaros et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations
Sunhwan Jo et al.
PLOS ONE (2007)
Determination of the conformation of the human VDAC1 N-terminal peptide, a protein moiety essential for the functional properties of the pore
Vito De Pinto et al.
CHEMBIOCHEM (2007)
Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules
D Hamelberg et al.
JOURNAL OF CHEMICAL PHYSICS (2004)
Ion permeation and selectivity of OmpF porin: A theoretical study based on molecular dynamics, brownian dynamics, and continuum electrodiffusion theory
W Im et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Molecular dynamics simulations of biomolecules
M Karplus et al.
NATURE STRUCTURAL BIOLOGY (2002)
A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels
W Im et al.
BIOPHYSICAL JOURNAL (2000)
Share Paper
