4.7 Article

Visibility graph based temporal community detection with applications in biological time series

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Longitudinal saliva omics responses to immune perturbation: a case study

George Mias et al.

Summary: Saliva omics has potential for non-invasive diagnostics and immune response monitoring. Multiple omics from saliva samples can reveal immune activation following vaccination, with mRNA results showing specificity and sensitivity to vaccination timeline compared to other omics.

SCIENTIFIC REPORTS (2021)

Article Biochemical Research Methods

PyIOmica: longitudinal omics analysis and trend identification

Sergii Domanskyi et al.

BIOINFORMATICS (2020)

Article Computer Science, Artificial Intelligence

Domain agnostic online semantic segmentation for multi-dimensional time series

Shaghayegh Gharghabi et al.

DATA MINING AND KNOWLEDGE DISCOVERY (2019)

Article Multidisciplinary Sciences

Longitudinal multi-omics of host-microbe dynamics in prediabetes

Wenyu Zhou et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

A longitudinal big data approach for precision health

Sophia Miryam Schussler-Fiorenza Rose et al.

NATURE MEDICINE (2019)

Article Multidisciplinary Sciences

Ollivier-Ricci Curvature-Based Method to Community Detection in Complex Networks

Jayson Sia et al.

SCIENTIFIC REPORTS (2019)

Article Physiology

Integrating multiomics longitudinal data to reconstruct networks underlying lung development

Jun Ding et al.

AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY (2019)

Review Physics, Multidisciplinary

Complex network approaches to nonlinear time series analysis

Yong Zou et al.

PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2019)

Article Biochemistry & Molecular Biology

Integrative Personal Omics Profiles during Periods of Weight Gain and Loss

Brian D. Piening et al.

CELL SYSTEMS (2018)

Article Biochemical Research Methods

EEG analysis of seizure patterns using visibility graphs for detection of generalized seizures

Lei Wang et al.

JOURNAL OF NEUROSCIENCE METHODS (2017)

Article Computer Science, Information Systems

Weighted Visibility Graph With Complex Network Features in the Detection of Epilepsy

Supriya Supriya et al.

IEEE ACCESS (2016)

Article Multidisciplinary Sciences

MathIOmica: An Integrative Platform for Dynamic Omics

George I. Mias et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

Visibility Graph Based Time Series Analysis

Mutua Stephen et al.

PLOS ONE (2015)

Article Physics, Multidisciplinary

Visibility graph analysis of 2002-2011 Pannonian seismicity

Luciano Telesca et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2014)

Article Physics, Multidisciplinary

From the time series to the complex networks: The parametric natural visibility graph

I. V. Bezsudnov et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2014)

Article Astronomy & Astrophysics

Visibility-Graph Analysis of the Solar Wind Velocity

Vinita Suyal et al.

SOLAR PHYSICS (2014)

Article Physics, Condensed Matter

Earthquake magnitude time series: scaling behavior of visibility networks

B. Aguilar-San Juan et al.

EUROPEAN PHYSICAL JOURNAL B (2013)

Article Biochemistry & Molecular Biology

Integrative Analysis of Longitudinal Metabolomics Data from a Personal Multi-Omics Profile

Larissa Stanberry et al.

METABOLITES (2013)

Article Biochemistry & Molecular Biology

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

Rui Chen et al.

Article Physics, Multidisciplinary

From Networks to Time Series

Yutaka Shimada et al.

PHYSICAL REVIEW LETTERS (2012)

Article Biochemical Research Methods

A statistical framework for biomarker discovery in metabolomic time course data

Maurice Berk et al.

BIOINFORMATICS (2011)

Review Mathematics, Interdisciplinary Applications

RECURRENCE-BASED TIME SERIES ANALYSIS BY MEANS OF COMPLEX NETWORK METHODS

Reik V. Donner et al.

INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS (2011)

Article Multidisciplinary Sciences

Feigenbaum Graphs: A Complex Network Perspective of Chaos

Bartolo Luque et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Duality between Time Series and Networks

Andriana S. L. O. Campanharo et al.

PLOS ONE (2011)

Article Physics, Applied

Network analysis of human heartbeat dynamics

Zhi-Gang Shao

APPLIED PHYSICS LETTERS (2010)

Article Clinical Neurology

New diagnostic EEG markers of the Alzheimer's disease using visibility graph

Mehran Ahmadlou et al.

JOURNAL OF NEURAL TRANSMISSION (2010)

Article Geosciences, Multidisciplinary

Visibility network of United States hurricanes

J. B. Elsner et al.

GEOPHYSICAL RESEARCH LETTERS (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Article Physics, Multidisciplinary

Visibility graph approach to exchange rate series

Yue Yang et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2009)

Article Physics, Fluids & Plasmas

Horizontal visibility graphs: Exact results for random time series

B. Luque et al.

PHYSICAL REVIEW E (2009)

Article Mechanics

Fast unfolding of communities in large networks

Vincent D. Blondel et al.

JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)

Article Physics, Multidisciplinary

Complex network-based time series analysis

Yue Yang et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2008)

Article Multidisciplinary Sciences

From time series to complex networks:: The visibility graph

Lucas Lacasa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Physics, Fluids & Plasmas

Finding community structure in networks using the eigenvectors of matrices

M. E. J. Newman

PHYSICAL REVIEW E (2006)

Article Physics, Multidisciplinary

Complex network from pseudoperiodic time series: Topology versus dynamics

J Zhang et al.

PHYSICAL REVIEW LETTERS (2006)

Letter Genetics & Heredity

GenePattern 2.0

M Reich et al.

NATURE GENETICS (2006)

Article Biochemistry & Molecular Biology

Galaxy: A platform for interactive large-scale genome analysis

B Giardine et al.

GENOME RESEARCH (2005)

Article Physics, Fluids & Plasmas

Finding community structure in very large networks

A Clauset et al.

PHYSICAL REVIEW E (2004)

Article Multidisciplinary Sciences

Community structure in social and biological networks

M Girvan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)