Related references
Note: Only part of the references are listed.Bridging-induced phase separation induced by cohesin SMC protein complexes
Je-Kyung Ryu et al.
SCIENCE ADVANCES (2021)
Methods for mapping 3D chromosome architecture
Rieke Kempfer et al.
NATURE REVIEWS GENETICS (2020)
Mechanisms and Functions of Chromosome Compartmentalization
Erica M. Hildebrand et al.
TRENDS IN BIOCHEMICAL SCIENCES (2020)
Nuclear actin regulates inducible transcription by enhancing RNA polymerase II clustering
Mian Wei et al.
SCIENCE ADVANCES (2020)
Bridging-induced microphase separation: photobleaching experiments, chromatin domains and the need for active reactions
C. A. Brackley et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2020)
Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
Ryosuke Nagashima et al.
JOURNAL OF CELL BIOLOGY (2019)
A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation
Yavor Hadzhiev et al.
NATURE COMMUNICATIONS (2019)
Role of nuclear RNA in regulating chromatin structure and transcription
Davide Michieletto et al.
CURRENT OPINION IN CELL BIOLOGY (2019)
Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation
Shun Hang Chan et al.
DEVELOPMENTAL CELL (2019)
Heterochromatin drives compartmentalization of inverted and conventional nuclei
Martin Falk et al.
NATURE (2019)
The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo
Kathrin Laue et al.
NATURE COMMUNICATIONS (2019)
Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis
Yuko Sato et al.
DEVELOPMENT (2019)
Differential contribution of steady-state RNA and active transcription in chromatin organization
A. Rasim Barutcu et al.
EMBO REPORTS (2019)
Nonequilibrium Theory of Epigenomic Microphase Separation in the Cell Nucleus
Davide Michieletto et al.
PHYSICAL REVIEW LETTERS (2019)
Formation of Chromatin Subcompartments by Phase Separation
Fabian Erdel et al.
BIOPHYSICAL JOURNAL (2018)
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
Sofia A. Quinodoz et al.
CELL (2018)
Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription
Haitham A. Shaban et al.
NUCLEIC ACIDS RESEARCH (2018)
Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance
Daniel Jost et al.
NUCLEIC ACIDS RESEARCH (2018)
Imaging dynamic and selective low-complexity domain interactions that control gene transcription
Shasha Chong et al.
SCIENCE (2018)
Coactivator condensation at super-enhancers links phase separation and gene control
Benjamin R. Sabari et al.
SCIENCE (2018)
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
Won-Ki Cho et al.
SCIENCE (2018)
Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development
Lucas J. T. Kaaij et al.
CELL REPORTS (2018)
Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II
Huasong Lu et al.
NATURE (2018)
Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome
Yongdae Shin et al.
CELL (2018)
Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos
Patricia Heyn et al.
RNA BIOLOGY (2017)
Dense Bicoid hubs accentuate binding along the morphogen gradient
Mustafa Mir et al.
GENES & DEVELOPMENT (2017)
Uniform gene expression in embryos is achieved by temporal averaging of transcription noise
L. Carine Stapel et al.
GENES & DEVELOPMENT (2017)
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition
Vladimir Despic et al.
GENOME RESEARCH (2017)
Evolutionarily Conserved Principles Predict 3D Chromatin Organization
M. Jordan Rowley et al.
MOLECULAR CELL (2017)
Phase separation drives heterochromatin domain formation
Amy R. Strom et al.
NATURE (2017)
Complex multi-enhancer contacts captured by genome architecture mapping
Robert A. Beagrie et al.
NATURE (2017)
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
Adam G. Larson et al.
NATURE (2017)
3D structures of individual mammalian genomes studied by single-cell Hi-C
Tim J. Stevens et al.
NATURE (2017)
A tunable refractive index matching medium for live imaging cells, tissues and model organisms
Tobias Boothe et al.
ELIFE (2017)
Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos
Shai R. Joseph et al.
ELIFE (2017)
Nuclear microenvironments modulate transcription from low-affinity enhancers
Albert Tsai et al.
ELIFE (2017)
SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs
Ryu-Suke Nozawa et al.
CELL (2017)
Ephemeral Protein Binding to DNA Shapes Stable Nuclear Bodies and Chromatin Domains
Chris A. Brackley et al.
BIOPHYSICAL JOURNAL (2017)
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
Clemens B. Hug et al.
CELL (2017)
Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains
Chris A. Brackley et al.
NUCLEIC ACIDS RESEARCH (2016)
Spatial organization of chromatin domains and compartments in single chromosomes
Siyuan Wang et al.
SCIENCE (2016)
Nuclear bodies: the emerging biophysics of nucleoplasmic phases
Lian Zhu et al.
CURRENT OPINION IN CELL BIOLOGY (2015)
A Temporal Window for Signal Activation Dictates the Dimensions of a Nodal Signaling Domain
Antonius L. van Boxtel et al.
DEVELOPMENTAL CELL (2015)
The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments
Thomas Cremer et al.
FEBS LETTERS (2015)
RNA transcription modulates phase transition-driven nuclear body assembly
Joel Berry et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Liquid-Liquid Phase Separation in Biology
Anthony A. Hyman et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30 (2014)
Regulation of RNA polymerase II activation by histone acetylation in single living cells
Timothy J. Stasevich et al.
NATURE (2014)
Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells
Timothy J. Stasevich et al.
METHODS (2014)
The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species
Patricia Heyn et al.
CELL REPORTS (2014)
3D imaging of Sox2 enhancer clusters in embryonic stem cells
Zhe Liu et al.
ELIFE (2014)
Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Iris Jonkers et al.
ELIFE (2014)
Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
Miler T. Lee et al.
NATURE (2013)
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
Takashi Nagano et al.
NATURE (2013)
Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization
Chris A. Brackley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Getting RNA and Protein in Phase
Stephanie C. Weber et al.
CELL (2012)
TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed
Argyris Papantonis et al.
EMBO JOURNAL (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Complexity of chromatin folding is captured by the strings and binders switch model
Mariano Barbieri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling
Yoko Hayashi-Takanaka et al.
NUCLEIC ACIDS RESEARCH (2011)
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
Clifford P. Brangwynne et al.
SCIENCE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
AJ Giraldez et al.
SCIENCE (2006)
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
IG Goldberg et al.
GENOME BIOLOGY (2005)
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
S Chambeyron et al.
GENES & DEVELOPMENT (2004)
Active genes dynamically colocalize to shared sites of ongoing transcription
CS Osborne et al.
NATURE GENETICS (2004)
Visualization of gene activity in living cells
T Tsukamoto et al.
NATURE CELL BIOLOGY (2000)
Share Paper
