4.8 Article

Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma

K. Gapp et al.

MOLECULAR PSYCHIATRY (2020)

Article Cell Biology

Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors

Yu H. Sun et al.

NATURE CELL BIOLOGY (2020)

Article Ecology

Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans

Deniz M. Ozata et al.

NATURE ECOLOGY & EVOLUTION (2020)

Article Endocrinology & Metabolism

Sperm RNA code programmes the metabolic health of offspring

Yunfang Zhang et al.

NATURE REVIEWS ENDOCRINOLOGY (2019)

Review Cell Biology

The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis

Paul Schimmel

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Review Neurosciences

Parental Advisory: Maternal and Paternal Stress Can Impact Offspring Neurodevelopment

Jennifer C. Chan et al.

BIOLOGICAL PSYCHIATRY (2018)

Article Andrology

A technical assessment of the porcine ejaculated spermatozoa for a sperm-specific RNA-seq analysis

Marta Godia et al.

SYSTEMS BIOLOGY IN REPRODUCTIVE MEDICINE (2018)

Article Cell Biology

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq

Christopher Daniel Green et al.

DEVELOPMENTAL CELL (2018)

Article Biochemical Research Methods

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro et al.

NATURE METHODS (2017)

Article Agriculture, Dairy & Animal Science

Oligo-dT selected spermatozoal transcript profiles differ among higher and lower fertility dairy sires

C. J. Card et al.

ANIMAL REPRODUCTION SCIENCE (2017)

Review Cell Biology

Translation in the mammalian oocyte in space and time

Andrej Susor et al.

CELL AND TISSUE RESEARCH (2016)

Article Ecology

Is the hook of muroid rodent's sperm related to sperm train formation?

M. Tourmente et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2016)

Article Biochemical Research Methods

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea et al.

NATURE PROTOCOLS (2016)

Editorial Material Cell Biology

Response to Comment on Absence of sperm RNA elements correlates with idiopathic male infertility

Meritxell Jodar et al.

SCIENCE TRANSLATIONAL MEDICINE (2016)

Editorial Material Cell Biology

Comment on Absence of sperm RNA elements correlates with idiopathic male infertility

Heike Cappallo-Obermann et al.

SCIENCE TRANSLATIONAL MEDICINE (2016)

Article Biochemical Research Methods

Spermatozoa input concentrations and RNA isolation methods on RNA yield and quality in bull (Bos taurus)

Sivashanmugam Parthipan et al.

ANALYTICAL BIOCHEMISTRY (2015)

Article Biochemistry & Molecular Biology

Widespread Co-translational RNA Decay Reveals Ribosome Dynamics

Vicent Pelechano et al.

Review Biochemistry & Molecular Biology

I'm Eating for Two: Parental Dietary Effects on Offspring Metabolism

Oliver J. Rando et al.

Article Multidisciplinary Sciences

Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress

Ali B. Rodgers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Cell Biology

Absence of sperm RNA elements correlates with idiopathic male infertility

Meritxell Jodar et al.

SCIENCE TRANSLATIONAL MEDICINE (2015)

Review Genetics & Heredity

PacBio Sequencing and Its Applications

Anthony Rhoads et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2015)

Article Cell Biology

High-Resolution Mapping of Chromatin Packaging in Mouse Embryonic Stem Cells and Sperm

Benjamin R. Carone et al.

DEVELOPMENTAL CELL (2014)

Article Biochemistry & Molecular Biology

Reduced pachytene piRNAs and translation underlie spermiogenic arrest in Maelstrom mutant mice

Julio Castaneda et al.

EMBO JOURNAL (2014)

Article Developmental Biology

The human testis-specific proteome defined by transcriptomics and antibody-based profiling

D. Djureinovic et al.

MOLECULAR HUMAN REPRODUCTION (2014)

Article Multidisciplinary Sciences

Defining a personal, allele-specific, and single-molecule long-read transcriptome

Hagen Tilgner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Agriculture, Dairy & Animal Science

Understanding Sperm Heterogeneity: Biological and Practical Implications

M. Ramon et al.

REPRODUCTION IN DOMESTIC ANIMALS (2014)

Article Biochemical Research Methods

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

Alper Kucukural et al.

BIOINFORMATICS (2013)

Article Reproductive Biology

Cryopreserved Bovine Spermatozoal Transcript Profile as Revealed by High-Throughput Ribonucleic Acid Sequencing

Christopher J. Card et al.

BIOLOGY OF REPRODUCTION (2013)

Review Obstetrics & Gynecology

The presence, role and clinical use of spermatozoal RNAs

Meritxell Jodar et al.

HUMAN REPRODUCTION UPDATE (2013)

Article Biochemistry & Molecular Biology

An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes

Xin Zhiguo Li et al.

MOLECULAR CELL (2013)

Article Biotechnology & Applied Microbiology

A single-molecule long-read survey of the human transcriptome

Donald Sharon et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Xian Adiconis et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Stability, delivery and functions of human sperm RNAs at fertilization

Edward Sendler et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Characterization of the human ESC transcriptome by hybrid sequencing

Kin Fai Au et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Cell Biology

Reprogramming and the mammalian germline: the Weismann barrier revisited

Davood Sabour et al.

CURRENT OPINION IN CELL BIOLOGY (2012)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Multidisciplinary Sciences

Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue

John D. Morlan et al.

PLOS ONE (2012)

Article Biochemistry & Molecular Biology

Angiogenin-Induced tRNA Fragments Inhibit Translation Initiation

Pavel Ivanov et al.

MOLECULAR CELL (2011)

Article Developmental Biology

Cleavage of rRNA ensures translational cessation in sperm at fertilization

G. D. Johnson et al.

MOLECULAR HUMAN REPRODUCTION (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

Peter J. Shepard et al.

Article Agriculture, Dairy & Animal Science

Identification and sequencing of remnant messenger RNAs found in domestic swine (Sus scrofa) fresh ejaculated spermatozoa

C. C. Yang et al.

ANIMAL REPRODUCTION SCIENCE (2009)

Article Multidisciplinary Sciences

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

Nicholas T. Ingolia et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Systematic variation in mRNA 3 '-processing signals during mouse spermatogenesis

Donglin Liu et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Obstetrics & Gynecology

Towards a better understanding of RNA carriage by ejaculate spermatozoa

David Miller et al.

HUMAN REPRODUCTION UPDATE (2006)

Article Biochemistry & Molecular Biology

Differences in polyadenylation site choice between somatic and male germ cells

K. Wyatt McMahon et al.

BMC MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Generation of biologically active retro-genes upon interaction of mouse spermatozoa with exogenous DNA

Carmine Pittoggi et al.

MOLECULAR REPRODUCTION AND DEVELOPMENT (2006)

Article Hematology

Role of exosomes in sperm maturation during the transit along the male reproductive tract

R Sullivan et al.

BLOOD CELLS MOLECULES AND DISEASES (2005)

Review Andrology

RNA in human sperm

RP Martins et al.

ASIAN JOURNAL OF ANDROLOGY (2005)

Article Biochemistry & Molecular Biology

The controversy, potential and roles of spermatozoal RNA

D Miller et al.

TRENDS IN MOLECULAR MEDICINE (2005)

Article Biotechnology & Applied Microbiology

Biased alternative polyadenylation in human tissues

HB Zhang et al.

GENOME BIOLOGY (2005)

Article Obstetrics & Gynecology

Cytoplasmic droplets: the good, the bad or just confusing?

TG Cooper

HUMAN REPRODUCTION (2005)

Article Biochemical Research Methods

Identifying periodically expressed transcripts in microarray time series data

S Wichert et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

Identification of mammalian microRNA host genes and transcription units

A Rodriguez et al.

GENOME RESEARCH (2004)

Article Multidisciplinary Sciences

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

T Shiraki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis

SN Peirson et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Cardiovascular and diabetes mortality determined by nutrition during parents' and grandparents' slow growth period

G Kaati et al.

EUROPEAN JOURNAL OF HUMAN GENETICS (2002)

Article Medicine, General & Internal

Spermatozoal RNA profiles of normal fertile men

GC Ostermeier et al.

LANCET (2002)