4.6 Article

Phylogenomic Analysis of Ultraconserved Elements Resolves the Evolutionary and Biogeographic History of Segmented Trapdoor Spiders

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters

Yan Yu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Multidisciplinary Sciences

Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida

Jesus Lozano-Fernandez et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

Chao Zhang et al.

BMC BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life

Rosa Fernandez et al.

CURRENT BIOLOGY (2018)

Article Geosciences, Multidisciplinary

Rapid incision of the Mekong River in the middle Miocene linked to monsoonal precipitation

Junsheng Nie et al.

NATURE GEOSCIENCE (2018)

Article Biochemistry & Molecular Biology

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

James Starrett et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biochemistry & Molecular Biology

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Shaun D. Jackman et al.

GENOME RESEARCH (2017)

Article Ecology

Identifying conserved genomic elements and designing universal bait sets to enrich them

Brant C. Faircloth

METHODS IN ECOLOGY AND EVOLUTION (2017)

Article Biochemical Research Methods

PHYLUCE is a software package for the analysis of conserved genomic loci

Brant C. Faircloth

BIOINFORMATICS (2016)

Review Geosciences, Multidisciplinary

The timing of India-Asia collision onset - Facts, theories, controversies

Xiumian Hu et al.

EARTH-SCIENCE REVIEWS (2016)

Article Geochemistry & Geophysics

Geodynamics of the South China Sea

Jean-Claude Sibuet et al.

TECTONOPHYSICS (2016)

Article Multidisciplinary Sciences

Spider phylogenomics: untangling the Spider Tree of Life

Nicole L. Garrison et al.

PEERJ (2016)

Article Multidisciplinary Sciences

Biogeographical Evidences Help Revealing the Origin of Hainan Island

Hua Zhu

PLOS ONE (2016)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

Simulating and detecting autocorrelation of molecular evolutionary rates among lineages

Simon Y. W. Ho et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Geochemistry & Geophysics

Ages and magnetic structures of the South China Sea constrained by deep tow magnetic surveys and IODP Expedition 349

Chun-Feng Li et al.

GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS (2014)

Article Geosciences, Multidisciplinary

Evolution of the South China Sea: Revised ages for breakup and seafloor spreading

Udo Barckhausen et al.

MARINE AND PETROLEUM GEOLOGY (2014)

Article Multidisciplinary Sciences

Whole-genome analyses resolve early branches in the tree of life of modern birds

Erich D. Jarvis et al.

SCIENCE (2014)

Article Evolutionary Biology

Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity

Mark de Bruyn et al.

SYSTEMATIC BIOLOGY (2014)

Article Multidisciplinary Sciences

Spider genomes provide insight into composition and evolution of venom and silk

Kristian W. Sanggaard et al.

NATURE COMMUNICATIONS (2014)

Article Geochemistry & Geophysics

The Cretaceous and Cenozoic tectonic evolution of Southeast Asia

S. Zahirovic et al.

SOLID EARTH (2014)

Review Geosciences, Multidisciplinary

Gondwana dispersion and Asian accretion: Tectonic and palaeogeographic evolution of eastern Tethys

I. Metcalfe

JOURNAL OF ASIAN EARTH SCIENCES (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Pre-Miocene birth of the Yangtze River

Hongbo Zheng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Evolutionary Biology

Bayesian Analysis of Biogeography when the Number of Areas is Large

Michael J. Landis et al.

SYSTEMATIC BIOLOGY (2013)

Article Biochemical Research Methods

treePL: divergence time estimation using penalized likelihood for large phylogenies

Stephen A. Smith et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

Greater India Basin hypothesis and a two-stage Cenozoic collision between India and Asia

Douwe J. J. van Hinsbergen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Evolutionary Biology

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

Brant C. Faircloth et al.

SYSTEMATIC BIOLOGY (2012)

Review Ecology

Biogeography of the Indo-Australian Archipelago

David J. Lohman et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 42 (2011)

Article Biochemical Research Methods

phangorn: phylogenetic analysis in R

Klaus Peter Schliep

BIOINFORMATICS (2011)

Article Evolutionary Biology

Protecting the innocent: studying short-range endemic taxa enhances conservation outcomes

Mark S. Harvey et al.

INVERTEBRATE SYSTEMATICS (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Geology

Did incision of the Three Gorges begin in the Eocene?

N. J. Richardson et al.

GEOLOGY (2010)

Article Multidisciplinary Sciences

Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia

Jing Che et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Geochemistry & Geophysics

Cenozoic tectonic evolution of Asia: A preliminary synthesis

An Yin

TECTONOPHYSICS (2010)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae)

Peng Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Uplift of the Tibetan plateau: Evidence from divergence times of glyptosternoid catfishes

ZG Peng et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)