4.8 Article

Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients

Journal

SCIENCE
Volume 371, Issue 6529, Pages 595-+

Publisher

AMER ASSOC ADVANCEMENT SCIENCE
DOI: 10.1126/science.abf3363

Keywords

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Funding

  1. Merck MSD
  2. Melanoma Breakthrough Foundation Breakthrough Consortium
  3. National Cancer Institute (NCI) of the National Institutes of Health (NIH) [R01 CA228181, R01 CA222203]
  4. James W. and Frances G. McGlothlin Chair in Melanoma Immunotherapy Research
  5. UPMC Hillman Cancer Center Microbiome Shared Facility
  6. NIH NCI Comprehensive Cancer Center Support CORE grant [P30 CA047904]
  7. University of Pittsburgh Center for Research Computing and Unified Flow Cytometry Core of the University of Pittsburgh's Department of Immunology
  8. Intramural Research Program of the NIH, NIAID, and NCI Center for Cancer Research

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The study demonstrated that fecal microbiota transplantation combined with anti-PD-1 therapy can overcome resistance to anti-PD-1 in a subset of PD-1 refractory melanoma patients, leading to clinical benefits. This approach induced changes in the gut microbiome and reprogrammed the tumor microenvironment, ultimately enhancing the efficacy of anti-PD-1 treatment.
Anti-programmed cell death protein 1 (PD-1) therapy provides long-term clinical benefits to patients with advanced melanoma. The composition of the gut microbiota correlates with anti-PD-1 efficacy in preclinical models and cancer patients. To investigate whether resistance to anti-PD-1 can be overcome by changing the gut microbiota, this clinical trial evaluated the safety and efficacy of responder-derived fecal microbiota transplantation (FMT) together with anti-PD-1 in patients with PD-1-refractory melanoma. This combination was well tolerated, provided clinical benefit in 6 of 15 patients, and induced rapid and durable microbiota perturbation. Responders exhibited increased abundance of taxa that were previously shown to be associated with response to anti-PD-1, increased CD8(+) T cell activation, and decreased frequency of interleukin-8-expressing myeloid cells. Responders had distinct proteomic and metabolomic signatures, and transkingdom network analyses confirmed that the gut microbiome regulated these changes. Collectively, our findings show that FMT and anti-PD-1 changed the gut microbiome and reprogrammed the tumor microenvironment to overcome resistance to anti-PD-1 in a subset of PD-1 advanced melanoma.

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